Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00556 ATGAGAGGAAAGGGTGTTCGCCGGCTTAACGCCACCGCCGCCGTCAGAAGGATACCTCCCTTTATGGATCACAGTGAGGATGTAAATGATGCTGCTATGCCTGATACATATAGTGACAGTGATGATGACCTAGAAGATGACAGAATGGGGAATTCAAATGACAATTTGGTTGATGGCATGAAAGAGCACTCCAATGGAAGTCCTCTGGGGATTCCAAGTCATGACTATTTATGTATAGATATTTTAGACAGAAATATTTGCTTGGCATGCAATGAAGGTGGGGAAGTGTTAGTTTGTAGTGAAATAGGCTGCCCTGTTAGTCTCCATTCAAAGTGTATCGGCGGTGAACCTTCATTTGACAATATGGGGAACTTCTTTTGTCCCTACTGCCAGTACAAACGAGCAGTGGCAGAAGTTAACGAATTGAAGAACAAGGCCTTGATTGAGAAGAAGGctttgtcaaaatttttgtgtaaaaacGAGGTTACGGGTGATAAAACAACACTGAAAAATGGGACTGTTAAGAGAGCAGAGCACCAAGAGGTACCCTATACAGGAGTTAAGGATTTCTTAGATGGCTGTGATAGGAAGGGCAGTATTGATGTTCAAAGTCAACCTTTGCAGACAGAGGGAGATCATGAAAGAGAAAGGATTGGAACAGATTATCCAAGACATGATGACGAGGATTTGCATGAAACAAATCTTGAGAATAGAGTGGAGGTAGAGTCCTTGAATGCTTCCCCTTTGAGAGTGTTGACGTTGAAAGATATAGAACATAATGATGAGGATATAGAAGAGATACTCCAGGAGGAACCAAGGGTGCCTGCAAGAGATCGTTCTGTCAGTGAAACTtttaattcatattcatattcagGGGCTGTCTCACCAAGAAAACGCTGTTTCAAAAACGGGGCAAATAGGATAGCATATCCTCAGACGTTTGATTCTGACAGAGAATCAACTCAGCAAAGAAAAACTTCAGGGACAAATGCATGTTACCAAAATCTGGAAGTTATCCCGTACGGAAGATTAAGAGAACCCCAGGGGTTGCCTAAGCAAGTCACAAAGGAGACACATGCAAAGCGTAAGAGATTACGTTGGACAACTGAAGAAGAAAGTCTGCTGAAGGAAGGAGTGTCAAGATTCTCAACGCAAAATCATAATATCCCTTGGAGAAAAATCTTGGAATATGGCAGCAATGTGTTTAACTCAACCCGTACTCCAGTTGATCTAAAGGATAAATGGAGGAACGTAGCCAAGGAAGACAGTACATTAAAGGCAGCAGGAGGTTTCCTTGTTAATTCTGCTGATGAGATAAAAATGACAGATAACATGACCTTGACTGAAATCTTGGAGAATATAAAGCCTATTTTGCATTCCCAGTATCATCTCAAATTTGACCGTGGCTTCACTTTTCTAGCATTCACTTAccggaaaatatttttcttttcagtagGCTCTGATACTAGAGAACGGAAAAGAATTAAGTGTTTGTCATATCCTTACATAAACTCGAGACCAAACCATACAAACTTGCCAGGTGAAACAGATGACACCGGGATTCTGCATCGTTCTCATAAAGCAGTTGGTTCAAGCATAGTAGCTTATAGGTTTTCAAATGAATCCCCTTCAATTACTAAGTCCGGTAGCATGAGGTTCCAAAGGAAGTGGTACAGAAAATGTGTGAACCGGAGTACTATGTCCGGCAGTCCAGAATTCATGAGTGCTTCACCGGCTGATTTTCTTTCTGGACTTTATTCTATAGCCGTAGATTGTATGTTCCCAATTGAGAATAAAAACTTTGATATGGTTGAGAGGTTCTTTTGCAGATATAGAGTGTCACATTACAATGAAGAGCCTGAATCAGAGaacaaaaaggaaactaaATCGGAGAACAAAAACCAAGTTGGATTTACTTGTCTTTTCCTGAAATTTGCTCCTGTAGTTTCTGTACCTTCAAAAGAAGACTTACTGGCAACATTTATCCAATTTGGTCCCTTGAAGGAATCTGAAGTGCAGTTGTTGAAGGACACTGGTATTGCGCAGATTGTTTTTGCCAATTGTTCAGATGCTGGTGATGCATTTTGTAGCGTAGTACAGAACAAACCATTTGGTACAACCCTTATTGATTGCAAACTACATCGTCCTACATCCCATCTTCCAAGAGAGACACTTGTGACATCTGCCCAACCTTCTGGGGGATCTGAATTGCATGTAGTTAACTATTCTACAGGCACTGACATGAAATCTGTGTGCCCTTCTGGGCCCAAGTCACCGCCTAGTGGAGCACCTTCTGTTGAATTTATTAGGCAGAAGCTTCAGATGATGACATCAATGCTGGAAAAGTCAGGGGATACTCTTTCTCCGCAGATGAGAACCAAACTGAAGGATGATGTGAAACACCTCATGTCAAAGGTGAACTCTATGACTTATTCTTCTGATGAAGTCTG 2450 0.4033 MRGKGVRRLNATAAVRRIPPFMDHSEDVNDAAMPDTYSDSDDDLEDDRMGNSNDNLVDGMKEHSNGSPLGIPSHDYLCIDILDRNICLACNEGGEVLVCSEIGCPVSLHSKCIGGEPSFDNMGNFFCPYCQYKRAVAEVNELKNKALIEKKALSKFLCKNEVTGDKTTLKNGTVKRAEHQEVPYTGVKDFLDGCDRKGSIDVQSQPLQTEGDHERERIGTDYPRHDDEDLHETNLENRVEVESLNASPLRVLTLKDIEHNDEDIEEILQEEPRVPARDRSVSETFNSYSYSGAVSPRKRCFKNGANRIAYPQTFDSDRESTQQRKTSGTNACYQNLEVIPYGRLREPQGLPKQVTKETHAKRKRLRWTTEEESLLKEGVSRFSTQNHNIPWRKILEYGSNVFNSTRTPVDLKDKWRNVAKEVGSDTRERKRIKCLSYPYINSRPNHTNLPGETDDTGILHRSHKAVGSSIVAYRFSNESPSITKSGSMRFQRKWYRKCVNRSTMSGSPEFMSASPADFLSGLYSIAVDCMFPIENKNFDMVERFFCRYRVSHYNEEPESENKKETKSENKNQVGFTCLFLKFAPVVSVPSKEDLLATFIQFGPLKESEVQLLKDTGIAQIVFANCSDAGDAFCSVVQNKPFGTTLIDCKLHRPTSHLPRETLVTSAQPSGGSELHVVNYSTGTDMKSVCPSGPKSPPSGAPSVEFIRQKLQMMTSMLEKSGDTLSPQMRTKLKDDVKHLMSKVNSMTYSSDEV 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00556 753 CDD SANT_TRF 366 420 - -
Bva12g00556 753 SUPERFAMILY Homeodomain-like 362 421 IPR009057 -
Bva12g00556 753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 182 IPR013083 -
Bva12g00556 753 PANTHER ALDOLASE-RELATED 565 751 - -
Bva12g00556 753 MobiDBLite consensus disorder prediction 208 228 - -
Bva12g00556 753 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 393 562 - -
Bva12g00556 753 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 565 751 - -
Bva12g00556 753 MobiDBLite consensus disorder prediction 23 61 - -
Bva12g00556 753 ProSiteProfiles Zinc finger PHD-type profile. 84 133 IPR019787 -
Bva12g00556 753 Pfam Myb-like DNA-binding domain 365 418 IPR001005 -
Bva12g00556 753 ProSitePatterns Zinc finger PHD-type signature. 87 130 IPR019786 -
Bva12g00556 753 Gene3D - 367 441 - -
Bva12g00556 753 MobiDBLite consensus disorder prediction 201 228 - -
Bva12g00556 753 SMART sant 363 421 IPR001005 -
Bva12g00556 753 ProSiteProfiles Myb-like domain profile. 359 419 IPR001005 -
Bva12g00556 753 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 359 423 IPR017930 -
Bva12g00556 753 PANTHER ALDOLASE-RELATED 393 562 - -
Bva12g00556 753 SMART PHD_3 86 131 IPR001965 -
Bva12g00556 753 SUPERFAMILY FYVE/PHD zinc finger 84 136 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00556 Bva-Chr12 7478278 7483553 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00556 364 443 Single Myb Histone (SMH) Gene Family AT3G49850 37.805 2.40e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva12g00556 Myb_DNA-binding 2.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00556 - - lang:109325681 241.121