Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00553 ATGTCTGCTCGAGGAGGGAGGGACCGACTGAGAAGGGATCACCCTTCGAGATATGAAGATAAGAGCATCAGTACATGGCGTAGCAGTAGCAATAATCCACCTTCTCGGCACCTTTGGGTCGGGAATCTACCACACAACATAGTAGAGGATGATGTTGCTCATCATTTCTTACGGTTTGGACCACTTGAGAGTATTGCTTTCCAACCTGGTCGCAGCTATGCTTTCATTAATTTCAAGAGGGATGAAGATGCTATTGATGCCTTGAAAGCACTACAAGGTTTTCCTCTAGCAGGCAACCCACTTAGAATTGAATTTGCAAAGGCGGATAAGCCATTAATGGTATCACGTGATGAAGATTCCTCTTGGGATGAAAGAAGCCCAGCATTAAGAGAATCCCCTTTCAACCAAAGAGAGTTTAGGGGACGCCATGGTAGCCCTGAACCACTTTATTCTGATAAATCCAAGTTGAGTGACAAAAATCCAGAGCCCAGTGAGGTTTTGTGGATAGGGTTCCCATCTCAATTGAAAGTGGACGAATTTACTTTAAGAAAggctttttctccttttggtGAGATTGAGAAAATTACTACATTTCCAGGTCGTAGTTATGCTTTTGTTCGCTTTAGGAGTCTGATGTCAGCATGCAGGGCAAAAGAGACTCTGCAGGGGAAGTTGTTTGGAAATCCCCGTGTACATATCTGTTTTGCTAAGAGTGACACTGGCTCGAGTGGTGGGAGGAACTCAATTAATGCTCCTCCTTCTCCATTTTACAAGCCAAGTGGTCGTCAGAGGTCTCCTGAGAGCCTCAGGcaggaaagaaattttgtagGCTTGAGTGGAGATCATAGCTTTAGTCCCCCTAAATTTTCCCCAAATTGGGATCCTGGAGATTCTGATGCCTATGAGTTCAGTGCAAGGGGTTCTTCATGGGCTGGGGGAACTAACACTTACGAGCAAAGGAGGGTTGGGGAAAAAGGGCTTCCACTAGGAATATCACGAGAAATCTATGATCATTCAAGTAGTCCTTCAAGAGATAGGCTTGTTCATATGGTTGATCTTCCGCAGAGAATTCCCCTAAAGGGTGCGTTGTTTGAAGATCCACGGAATTTTCCAGAAGATGACTATCTACATGATGCTAAACGGATAAAAACGGGCTCCTTTCCTCCTGAGGACATTCCTGATTATCCTTTGTCTGATTTAGGAAGACAGAAACATGCATTCTCTCGGATATTATCTGATTTCCCCCAACCTGAGGTGCGTGATAAAAGCTTTGATGCTGGACCTTATGCTTATAGACAGACTCCTGATCACATACCGAATTCACCCATAGCTGGTTTAGATAGAATTGATCAGTGGCAACCTTATGATGGTTTGCAAATGGGTCATGGTGCTCTGCAATCAAATCCtgttgagaagagaaaattgacGCCTGAACCTAGACCTGTATCTGCAATGGAGTGGAAATGGGAAGGAACTATAGCAAAAGGTGGAACTCCTGTTTGTCGTGCGCGGTGTTTTCCTGTGGGAAAAGCCCTGGATATATTATTACCTGAATTCTTGGATTGCACTGCAAGGACTGGTCTAGACATGCTTTCAAAGCATTATTACCAAGCTGCTGGTGCTTGGGTTGTCTTCTTTGTGCCTGAAAGTGATGCTGAAATTGGGTTCTATAATGAATTCATGCATTATCTGGAGGAAAAGCAGCGGGCTGCTGTAGCTAAATTGGACGACAGGAACACCTTATTTCTTGTACCTCCGTCAGATTTCTCAGAAAAAGTATTGAAGGTACCTGGAAAATTGAGCATTTCTGGTGTTGTCCTCAGGTTGGAGCATCCCAGTTCAAATCATGGTCCCATGCAcgatcaaaaagaaatagaagatgtAAAGTTATCGTCTTATCATGGGGATACATTCTATCCAAAGCCATCAGTGCCATCAGCAGTTTTCCCTCCTACCACATCTGTTCCAGAATTGGGTAAGTCTGGAATGAGCAATCTTCCTTTCCTCGGCAATAAAATGACATCTGCCCCACCTACATTAGTTTCAGGGTCAGTGCGGGGTGTTAATATAACTGTGTCTCATGATGAAAGAAGGCATGATTATCCTAATTCTATCCAGCAGCAGAAACCTATGTCTGGACCAAACTGGTCTTCTCCCCATTTGCAGAACCTGATCTCTAATAGAAGTTTACCAATGCAAATATCGAATGGTGGTGCCGAGTCGGTCCCTCAGGAGCATCAGCAGTTCATGTATAGGGAAATGCCTGATGCAAACCCCGGTCAGCGAACAGGCGGAATTTCTGGTATTCCACTATCTGGGAACAGCAAGTCAACACTTCAGGAAATAAGACCTATGGATTCTTCATCCATATCTGCAGGAGCCTTACAACCAGAGCAGCTTGCACAACTAGCATCTCTTCTTGGGCAGAAGAGGCAATCAGGAAACTCTCAGAGTGCATCTACATTGGACGATCCCAGGCAGATTAACAGAGTTACGACGTCGGACACCTCATCTGGACCCTCCCAGAAATATGCTGTTGAAAACAACAATCCAGTGAAACCTGAACTTTCAAATTCTCAACTTAGTGAAGTTCTGCAGTTGCAAAAGCAACAACAGATGTCAAATGTGCCACAAGTGGCTCATAGAGAACCACAAAGAGGTGCTAGTGAAAATCAGCAAATGATTAATAGTGGCTTGCAGCAAGATGCAGGAGATGATCCACAGAAACGTCTACAGGCAACATTGCAGCTTGCTGCAGCTCTTCTTCAGCAAATCCAGCAAGGGAAATG 2789 0.4335 MSARGGRDRLRRDHPSRYEDKSISTWRSSSNNPPSRHLWVGNLPHNIVEDDVAHHFLRFGPLESIAFQPGRSYAFINFKRDEDAIDALKALQGFPLAGNPLRIEFAKADKPLMVSRDEDSSWDERSPALRESPFNQREFRGRHGSPEPLYSDKSKLSDKNPEPSEVLWIGFPSQLKVDEFTLRKAFSPFGEIEKITTFPGRSYAFVRFRSLMSACRAKETLQGKLFGNPRVHICFAKSDTGSSGGRNSINAPPSPFYKPSGRQRSPESLRQERNFVGLSGDHSFSPPKFSPNWDPGDSDAYEFSARGSSWAGGTNTYEQRRVGEKGLPLGISREIYDHSSSPSRDRLVHMVDLPQRIPLKGALFEDPRNFPEDDYLHDAKRIKTGSFPPEDIPDYPLSDLGRQKHAFSRILSDFPQPEVRDKSFDAGPYAYRQTPDHIPNSPIAGLDRIDQWQPYDGLQMGHGALQSNPVEKRKLTPEPRPVSAMEWKWEGTIAKGGTPVCRARCFPVGKALDILLPEFLDCTARTGLDMLSKHYYQAAGAWVVFFVPESDAEIGFYNEFMHYLEEKQRAAVAKLDDRNTLFLVPPSDFSEKVLKVPGKLSISGVVLRLEHPSSNHGPMHDQKEIEDVKLSSYHGDTFYPKPSVPSAVFPPTTSVPELGKSGMSNLPFLGNKMTSAPPTLVSGSVRGVNITVSHDERRHDYPNSIQQQKPMSGPNWSSPHLQNLISNRSLPMQISNGGAESVPQEHQQFMYREMPDANPGQRTGGISGIPLSGNSKSTLQEIRPMDSSSISAGALQPEQLAQLASLLGQKRQSGNSQSASTLDDPRQINRVTTSDTSSGPSQKYAVENNNPVKPELSNSQLSEVLQLQKQQQMSNVPQVAHREPQRGASENQQMINSGLQQDAGDDPQKRLQATLQLAAALLQQIQQGK 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00553 929 PANTHER RNA RECOGNITION MOTIF-CONTAINING 11 921 - -
Bva12g00553 929 MobiDBLite consensus disorder prediction 135 158 - -
Bva12g00553 929 CDD RRM3_Spen 38 107 - -
Bva12g00553 929 SMART rrm1_1 166 234 IPR000504 GO:0003723
Bva12g00553 929 SMART rrm1_1 37 104 IPR000504 GO:0003723
Bva12g00553 929 PANTHER RNA-BINDING PROTEIN SPENITO 11 921 - -
Bva12g00553 929 MobiDBLite consensus disorder prediction 754 777 - -
Bva12g00553 929 MobiDBLite consensus disorder prediction 881 908 - -
Bva12g00553 929 MobiDBLite consensus disorder prediction 881 903 - -
Bva12g00553 929 MobiDBLite consensus disorder prediction 240 269 - -
Bva12g00553 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 238 IPR000504 GO:0003723
Bva12g00553 929 MobiDBLite consensus disorder prediction 133 158 - -
Bva12g00553 929 MobiDBLite consensus disorder prediction 808 855 - -
Bva12g00553 929 MobiDBLite consensus disorder prediction 704 722 - -
Bva12g00553 929 MobiDBLite consensus disorder prediction 1 21 - -
Bva12g00553 929 MobiDBLite consensus disorder prediction 240 254 - -
Bva12g00553 929 Gene3D - 151 244 IPR012677 -
Bva12g00553 929 MobiDBLite consensus disorder prediction 697 722 - -
Bva12g00553 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 108 IPR000504 GO:0003723
Bva12g00553 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 101 IPR000504 GO:0003723
Bva12g00553 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 230 IPR000504 GO:0003723
Bva12g00553 929 Pfam SPOC domain 485 597 IPR012921 -
Bva12g00553 929 SUPERFAMILY RNA-binding domain, RBD 28 117 IPR035979 GO:0003676
Bva12g00553 929 SUPERFAMILY RNA-binding domain, RBD 152 240 IPR035979 GO:0003676
Bva12g00553 929 MobiDBLite consensus disorder prediction 1 34 - -
Bva12g00553 929 Gene3D - 17 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00553 Bva-Chr12 7446237 7457226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00553 27 237 Eukaryotic Initiation Factors Gene Family AT1G22760 26.786 2.66e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00553 - - gmx:100811668 1112.44