Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00515 ATGAGTCTCCTAACCAACTCTCTATCTCTTTTGGTTCTTTTGTTTGCAGTTTTTCTGTCTTTCCATCTCATAAATCCAACccaatattatatcaaaattttcaaagattacACTTTCACCACCTTATCATCTTCACTACCTGCATTTCCTGCTATCATTTTATCCTACAGGCATGGTAACATGCATCGTCATCACAAGGACCGGCCCGATTCGGGCAATGCAGGTTCCATCTGTGATGATTTCCCAGCAGGCATTCCTCCTCCAGACACCAACACAACATCATATCTTTGTGTTGATCGAAAAGGGTGTTGTAATTTCACAACAGTACAAGCAGCTGTTAATGCAGTGCCAGATATGAGCCAGAAAAGAACCATAATTTGGATCAACAAAGGCATTTATTATGAGAAAGTCACAGTGCCCAGAACCAAACCTAATATAACATTTCAAGGACAAGGGTATACTTCAACTGGAATTGCATGGAATGATACCGCGAAGTCTGCAAATGGCACATTTTCTAGTGGCTCTGTACAAGTTTTTGCTTCCAACTTCGTTGCCAAGAACATCAGCTTCATGAATGTAGCTCCGATTCCAAGCCCAGGAGAAGTAGGAGCACAGGCAGTTGCAATAAGAATAGGAGGAGATCAAGCTGTGTTCTTGGGTTGTGGATTCTTTGGAGCACAAGACACCCTTCATGATGATAGAGGACGCCATTACTTCAAGGAATGTTATATCCAAGGCTCCATTGATTTTGTGTTTGGCAATGGAAGGTCACTCTACGAGAATTGCCAGTTAATTTCCATGGCAAATCCAGTTCCCCAAGGACAAAGGTCCATCAACGGTGCCGTCACGGCTCATGGCAGAGCTTCCATGGATGAAAATTCAGGGTTTGCATTTGTCAACTGCACTATTGGAGGCAATGGCAGAATATGGTTAGGTCGAGCATGGAGGCCGTATTCTCGTGTCGTTTTTGCCCTAACCACAATGTCAGATATCGTTGCCCCTGAGGGTTGGAATGATTTCAATGACCCTACAAGAGATCAGACCATATTCTATGGAGAATACAATTGCTCAGGGCTTGGGGCTAATATGAGCATGAGAGCACCTTATGTTCAGAGGTTAAACGACACACAAGCTTTGCCGTTCCTTAATACAACTTTCATTGATGGCGATCAATGGTTACAATCCAACATATA 1193 0.4233 MSLLTNSLSLLVLLFAVFLSFHLINPTQYYIKIFKDYTFTTLSSSLPAFPAIILSYRHGNMHRHHKDRPDSGNAGSICDDFPAGIPPPDTNTTSYLCVDRKGCCNFTTVQAAVNAVPDMSQKRTIIWINKGIYYEKVTVPRTKPNITFQGQGYTSTGIAWNDTAKSANGTFSSGSVQVFASNFVAKNISFMNVAPIPSPGEVGAQAVAIRIGGDQAVFLGCGFFGAQDTLHDDRGRHYFKECYIQGSIDFVFGNGRSLYENCQLISMANPVPQGQRSINGAVTAHGRASMDENSGFAFVNCTIGGNGRIWLGRAWRPYSRVVFALTTMSDIVAPEGWNDFNDPTRDQTIFYGEYNCSGLGANMSMRAPYVQRLNDTQALPFLNTTFIDGDQWLQSNI 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00515 397 Pfam Pectinesterase 98 390 IPR000070 GO:0030599|GO:0042545
Bva12g00515 397 ProSitePatterns Pectinesterase signature 2. 244 253 IPR033131 -
Bva12g00515 397 Gene3D - 89 397 IPR012334 -
Bva12g00515 397 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 395 - -
Bva12g00515 397 SUPERFAMILY Pectin lyase-like 95 394 IPR011050 -
Bva12g00515 397 PANTHER PECTINESTERASE 8-RELATED 11 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00515 Bva-Chr12 7268459 7271953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00515 70 394 Carbohydrate Esterase AT1G05310 73.846 0.0 532