Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00513 ATGGAAAATGCAGGTTCTGAGCTTCAAAATGACGGGGATTTCGTGTCAGATCCTGCTTGTCATCTGGAGACAAGAACTGGAGCtgacaaagaagaagagacCTCCTTGATTCAGCAGTCGAGACGACCAAGCCTCCCCTCTTTGCAAATACCAGCAAGGTCACTAGAAAGCACACCATCTTCTCTTGCAAATGCAGATTCTCCTTTGCTGTCAAGTCCGGGTTCCTCTAGAGGAGGACTACCCCCAAGGCCAAATTCTGCCAAACCCAAGTCTTCTATGAGAAGCTTACTTGCTCAGAGGAGCTTTAAGACAAAAGATAATTCCCAAGACTGTGAAAGGACAGTCCTTATTGTTCCTGATACTCTCCCATCCGATGGTCCTGTGGATCAGCCTTCAACTTCAAGGTCCCTTTCTCTTAATAAGGTTTTATTACCTTCATCAAGAAAAGCAACACATTCACTACCAGTTACGCCAACCACGAATGTAGGCCCAGAGATTGTGGATGGAAGACCCCTATCTAATGTTTTGGATTCAAGTAAAATGGATGTTAAGAAGCATATGACTCGATCATTTTCAGTTCCAGTTAATATCAGAAACAGTAGTTTAAGGCGTACAAGTTCTAGTAGTTTGATTCGTGTGATTTCAGCAAGATCACGTGCTGCAACAGTTGAAGGTGCTTCAAGTGATATTGCCCCAAGGGCCGAGATTgTCATCGAAGATGCAGCTGAGGATATCCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTCGTGGAGCTTGGGGAAGGAGGGGATACTCTTAAGATGGAGTGCAGTTGTAAAGGTGAGCTTGCACTCGCTCACCAAGCGTGTGCAGTGAAGTGGTTCAGTATCAAAGGAAACAAGACCTGTGATATCTGCAAGCAGGATGTCCGAAACCTCCCAGTAACACTGTTGAAAATCCATAATTCTTCCAGACAGCCATCAAATACAGTTGAACATAGAGAAGTCGCTTATTACAGGATCTGGCAGCTTGTACCCACACTTACATTAGTCAGCATGCTAGCTTATTTCTGCTTTTTGGAGCAACTTCTGATTTCAGATTTGGGTGTTCGTGCTCTAGCCATTTCATTACCTTTCTCCTGCGTTTTAGGCCTCCTTTCATCCATGATTGCTTCAACTATGGTGAGCGGGAGTTACATATGGGCTTATGCTTGCTTCCAGTTTGCAATCATCATCCTGTTTGCTCATGTGTTTTATTCAATACTTAATGTAAGTCCGATTCTGTcagttcttctttcttcattcacGGGATTTGGGATTGCAATCAGCACAAACACTCTTCTAGTTGAATACATTAGATGGAGAGCTAGCAGGCATCTTCTGTCTTTGAATCACGACGTTTACCGGACAccgcagcagcagcagcagcagccaGAACAGCATCATCAACAGCAAAGGCAGCAGACAGAGCAGCATCAATG 1460 0.4212 MENAGSELQNDGDFVSDPACHLETRTGADKEEETSLIQQSRRPSLPSLQIPARSLESTPSSLANADSPLLSSPGSSRGGLPPRPNSAKPKSSMRSLLAQRSFKTKDNSQDCERTVLIVPDTLPSDGPVDQPSTSRSLSLNKVLLPSSRKATHSLPVTPTTNVGPEIVDGRPLSNVLDSSKMDVKKHMTRSFSVPVNIRNSSLRRTSSSSLIRVISARSRAATVEGASSDIAPRAEIVIEDAAEDIPEEEAVCRICFVELGEGGDTLKMECSCKGELALAHQACAVKWFSIKGNKTCDICKQDVRNLPVTLLKIHNSSRQPSNTVEHREVAYYRIWQLVPTLTLVSMLAYFCFLEQLLISDLGVRALAISLPFSCVLGLLSSMIASTMVSGSYIWAYACFQFAIIILFAHVFYSILNVSPILSVLLSSFTGFGIAISTNTLLVEYIRWRASRHLLSLNHDVYRTPQQQQQQPEQHHQQQRQQTEQHQ 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00513 486 MobiDBLite consensus disorder prediction 1 136 - -
Bva12g00513 486 MobiDBLite consensus disorder prediction 88 104 - -
Bva12g00513 486 Pfam RING-variant domain 252 299 IPR011016 GO:0008270
Bva12g00513 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 307 IPR013083 -
Bva12g00513 486 SMART ringv_2 251 300 IPR011016 GO:0008270
Bva12g00513 486 PANTHER OS02G0165000 PROTEIN 24 476 - -
Bva12g00513 486 ProSiteProfiles Zinc finger RING-CH-type profile. 244 306 IPR011016 GO:0008270
Bva12g00513 486 MobiDBLite consensus disorder prediction 465 486 - -
Bva12g00513 486 PANTHER OS02G0165000 PROTEIN 24 476 - -
Bva12g00513 486 Coils Coil 475 486 - -
Bva12g00513 486 CDD RING_CH-C4HC3_MARCH 252 300 - -
Bva12g00513 486 MobiDBLite consensus disorder prediction 23 37 - -
Bva12g00513 486 SUPERFAMILY RING/U-box 248 303 - -
Bva12g00513 486 MobiDBLite consensus disorder prediction 38 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00513 Bva-Chr12 7251065 7256680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00513 237 329 C3H Transcription Factor Family AT2G37950 38.298 6.28e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00513 - - pdul:117621406 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00513 12 7251065 7256680 Bva12g03294 12 23745321 23751829 BWGD