Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00495 ATGGCTGCTTACAAAGAAACATTAAACCAAGTCAAACCAACCCATCAAACCCAAGTGGATAAAGAAAGTCCGAAGGAGAACATCAAGGGTTGGAAGCTGTCAGAGAGAGccagagaaaatgaagaggaagCTGCAGGGACTGGTAGAGTGAAATGGAGTGTTTACTCAACCTTTGTCACGTCTGCTTATGGAGGCACACTTGTTCACTTCATTCTTCTCTGCCATGTTCTCTTTCAAGCACTGCAGATGGGAAGCAATTACTGGATTGTTTGGGCTACTGAGCACAGAGACATAGTCAGCCTCCAGAAGCTCATAGGGATATTCACTCTACTATTTAGTGGTAGCTCCATCTTCATACTTGGTAGAGCTGTTTTGCTGTCAACAGTTGCTGTGGAGACGGCTCAGCGTCTTTACCACGGAATGATTGCATCAGTTTTTAGAGCACTTGTGTCATTTTTTGACACCACACCTTCCAGCAGAATCCTTAATAGGGCTTATCACATCCCTACTGCTAGAGAATTAGCCAGGATGGTAGGGATTAGAAAGGATCCAATCTTGCATCATTTCTCTGAATCAGTTGCTGGGGCTGCTACAATCCGCAGTTTCAATCAAGAGCAAAGATTCTTGGCAAAAGTCATGGATCTTGCTGATGATTATTCTCGCTTGGCAGGTTTGGCAGCTACATATGGTTTAAGCTTGAATGTCATTCAAACTTGGGTGTTATGGAATCTTTGCAGTGTggagaacaaaataatatcagTAGAAAGAATACTCCATATCACTAACATACCACTTGAGGAACCATTGATAGTTCAAGATTGTAGGCCAGAGCCAGAGTGGCCTAAGGAGGGAAAAATTGAACTCCATAAACTTCATATACAGTATGCTCCAGCTGCTCTTATGGTACTCAAAGGGATCACTTGCACTTTACaagggcaaaagaaaattggaattGTAGGCAGGACACTGAGTGGGAAATCCACTTTTGTTCATGCACTTTTCCGGGTAGTGGAGCCTTTTTTGGGGTGCATTATCATTGATGGAGTAGATATCAGCAAGATTGGTCTGCAAGACTTGAGATCCAAACTAAGCATAATTCCTCAGGATCCAACCTTATTCCAAGGGAGTGTGACGACTAACTTGGATCCTCTAAAACAACATTCAGATCAAGAGCTCTCGGAGGTTCTAAAGAAGTGCCATCTTGCTGATATTGTAAGGCAAGACATAAGGTTGCTTGATGCTCCAGTGGATGAGAATGGACAAAATTGGAGTGTTGGGCAAAGGCAGCTTGTTTGCCTTGCAAGGCTTCtgttgaagaaaagaagaattttagtTCTCGATGAGGCTACGGCATCTATGGACACAGTAACTGATAATTTAACTATTATAGAAGAGACTAGTGGCTGTACGGCCCTCACAGTGGCACATAGGATAAATAGGATTATTGACAATAACTTGGTTCTTCTTCTTAATGAAGAAATATTGCAGACACAGATTAATTGCAGTGGTGAAGatgaggatgaagaagaagctgcAGAGACTGCAATGCAGATTGGAAGCAATTACTGGATTGCTTGGGCTACTGAGCATAGAGACATAGTCAGCCCCCAGAAGCTCATAGGGATATTCACTCTACTATCTGGTGGTAGCTCCATCTTCATACCTGGTAGAGCTGTTTTGCTGTCAACAGTTGCCGTGGAGACGGCCCAGCGTCTTTCCCATGAAATGATTGCGTCAGTTTTTAGAGCACCAGTGTCATTTTTTGTTTACCACACCTTCCAGCAGAATCCTTA 1793 0.4083 MAAYKETLNQVKPTHQTQVDKESPKENIKGWKLSERARENEEEAAGTGRVKWSVYSTFVTSAYGGTLVHFILLCHVLFQALQMGSNYWIVWATEHRDIVSLQKLIGIFTLLFSGSSIFILGRAVLLSTVAVETAQRLYHGMIASVFRALVSFFDTTPSSRILNRAYHIPTARELARMVGIRKDPILHHFSESVAGAATIRSFNQEQRFLAKVMDLADDYSRLAGLAATYGLSLNVIQTWVLWNLCSVENKIISVERILHITNIPLEEPLIVQDCRPEPEWPKEGKIELHKLHIQYAPAALMVLKGITCTLQGQKKIGIVGRTLSGKSTFVHALFRVVEPFLGCIIIDGVDISKIGLQDLRSKLSIIPQDPTLFQGSVTTNLDPLKQHSDQELSEVLKKCHLADIVRQDIRLLDAPVDENGQNWSVGQRQLVCLARLLLKKRRILVLDEATASMDTVTDNLTIIEETSGCTALTVAHRINRIIDNNLVLLLNEEILQTQINCSGEDEDEEEAAETAMQIGSNYWIAWATEHRDIVSPQKLIGIFTLLSGGSSIFIPGRAVLLSTVAVETAQRLSHEMIASVFRAPVSFFVYHTFQQNP 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00495 597 Gene3D ABC transporter type 1, transmembrane domain 167 267 IPR036640 GO:0005524|GO:0016021
Bva12g00495 597 PANTHER OS01G0902100 PROTEIN 222 493 - -
Bva12g00495 597 SMART AAA_5 312 500 IPR003593 -
Bva12g00495 597 Pfam ABC transporter transmembrane region 70 164 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva12g00495 597 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 518 589 - -
Bva12g00495 597 CDD ABCC_MRP_domain2 284 492 - -
Bva12g00495 597 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 169 223 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva12g00495 597 Pfam ABC transporter 303 451 IPR003439 GO:0005524
Bva12g00495 597 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 165 - -
Bva12g00495 597 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 165 223 - -
Bva12g00495 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 492 IPR027417 -
Bva12g00495 597 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 70 164 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva12g00495 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 288 518 IPR003439 GO:0005524
Bva12g00495 597 MobiDBLite consensus disorder prediction 1 26 - -
Bva12g00495 597 Gene3D ABC transporter type 1, transmembrane domain 510 593 IPR036640 GO:0005524|GO:0016021
Bva12g00495 597 Gene3D ABC transporter type 1, transmembrane domain 1 166 IPR036640 GO:0005524|GO:0016021
Bva12g00495 597 SUPERFAMILY ABC transporter transmembrane region 515 589 IPR036640 GO:0005524|GO:0016021
Bva12g00495 597 SUPERFAMILY ABC transporter transmembrane region 70 266 IPR036640 GO:0005524|GO:0016021
Bva12g00495 597 Gene3D - 269 509 IPR027417 -
Bva12g00495 597 PANTHER OS01G0902100 PROTEIN 518 589 - -
Bva12g00495 597 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 222 493 - -
Bva12g00495 597 PANTHER OS01G0902100 PROTEIN 3 165 - -
Bva12g00495 597 PANTHER OS01G0902100 PROTEIN 165 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00495 Bva-Chr12 6998603 7002357 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00495 284 516 Calmodulin-binding Proteins AT2G36910 30.159 2.17e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00495 - - qsu:112005690 574.704