Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00494 ATGGAGTTCATGGCCTTTTCAACCGTGTTGTTTCTTTTACTTACACTTTCCCTTTTCCCAtgttcatcttcatcatccaCCAAGGGCTTCTCCCTCTCAGTGGAAGAAACAGATCATGTTATAGTCTCACCCAATGGCATGTTCTCTGCTGGCTTTCATAAGGTTGGTGAAAATGCTTTTTGCTTTGCCATTTGGTTCAGCGAACCTCATGGCCAAAATACCACAGTGGTTTGGATGGCAAACCCTGACTATCCTGTGAATGGAAAGCGCTCAACACTTTCACTTCAAGGGTCAGGCAATCTTGTCTTGACAGATGCCAATCAATTCAACGTTTGGGCTACCAACACTTCCTCACCAACCTCTGTAAAATTGGTTCTCAACAATGATGGCAACCTTGTTCTACATGAGGTACATGGTGGTGCCATTTTGTGGCAAAGTTTTAATTATCCAACAAATACACTTCTTCCTGGCCAAACTCTCACCAGAGATACAGCCCTTGTCTCCTCAAGAAGTGAAAGTAACCTTTCCTCAGGCTTCTATAAGCTTTTCTTTGACAAAGATAACGTCCTCCATCTTCTCTATGACGGTTTTACCATCTCATCTTTTTACTGGCCAGATCCTTGGAAGCTAGTTTGGGCAGATAGGTTCACATATAATGCTAGTAGACTTGCAGTTCTTGATGTCTTGGGAAACTTCAGTTCAACGGACAATTATCATTTCATGACATCAGATTATGGTGCAGTGCTTCAAAGAAGGCTATCAATTGATTATGATGGTAATATCCGAGTGTACAGTCGAAAACACATGGGGGAGAAATGGTATGTTTCATGGCAAGCCAAACAACAACCATGCAAGATTCACGGCACATGTGGACCAAACAGTATATGCAGCAACGATCCTTATTCTGGTAGGAAATGCTCTTGCCTTCCAGGTTATAAGGTTAAAAATGAGAGTGATTTGTCTTATGGGTGTGAAGCAGAATTTCGTTTGTCTTGCAACAAAAATGAGTCTCACTTTCGCTATTTTAACCATGTCGAGTTCTTTGGCTATGACTTTCACTACACCCAAAATTCTTCATACAAACAATGTGAGGATTTATGCTCGCAATTATGTGATTGCGTAGGCTTCCAATATTCCTTTAAAAAGGAAACTGGCTACGCTGACTGTTTCCCAAAGACAATGTTACTCAATGGTTATCGTTCACCTGCTTTTGAAGGAGCAATCTACTTGAAATTGCCAAAAGGCAGTTCATTCTCCCATCACCTAGAAGAATATGTCAGAAATTGTTCTCATACTGTCAATCCTATATTCCTTGAGAGAGGGTATGTCAAAGGACATGAAAAAATGTTAGTGAAAGTCTTCTTGTGGTTTGTCTGTGTAATTGCAGTGATTGAGGTAGTTGGCATCTCCATAATTTGGTCTTACTTGACAATTTCCAAGAAAAAGTCTAGTATAGATCAAGGTTACGGACTCACCACAAGTGGCTTCAGAAAATTTAGCTACTCTGAGTTGAAAAAGGCAACAAACGGATTCAGCCAAGAGATTGGGAGGGGAGGCGGAGGAATTGTCTATAAGGCCATATTGTCAGATCATCGAGTTGCTGCCGTGAAGAGACTTAACGAAGCTAATCAAGGAGAGAGCGAATTCCTAGCAGAGGTGAGCATCATTGGAAGGCTTAACCACATGAATTTGATAGAAATGTGGGGATATTGTACAGAGGGCAAACACAGACTATTGGTGTATAAGTACATGGAGAATGGTTCTTTGGCAGAAAACCTCTTGTCAGAAACACTTGATTGGAAAAAAAGGTATGACATTGCTTTAGGAACAGCTAAAGGTCTAGCATATCTACATGAAGAATGTCTCGAATGGATTTTGCATTGTGATATTAAGCCTCAAAATATActtttggattttaattttgaaccTAAGATAGCAGATTTTGGTTTGTCTAAActacaaaatagaaataatatcaataatgCAAACTTCTCTACAATAAGAGGTACTAGAGGTTATATGGCTCCAGAATGGATTTTTAACTTACCAATTACCTCTAAAGTAGATGTCTATAGTTATGGAATTGTTGTCCTAGAGATGATAACTGGAAAGAGCCCATCAATGAACATTGATATTGCTGAAGGAGCAGAAACACATCATGGTAGACTAGTAACATGGGTAAGAGAGAGGAAGAGCAAAGGATCAACAATGGCTTCCTGGGTCGAAGAGATAATTGACCCGACAATCGAAGGgaattatgatttaaataagATGGAAATTTTGTCTAGGGTGGCTTTGGATTGTGttgaggaagagaaagatgtGAGACCCAACATGAGTCAAATTGTGGAGATGCTTCAAAACCCTGAAAAATATTGTCAACATTG 2387 0.385 MEFMAFSTVLFLLLTLSLFPCSSSSSTKGFSLSVEETDHVIVSPNGMFSAGFHKVGENAFCFAIWFSEPHGQNTTVVWMANPDYPVNGKRSTLSLQGSGNLVLTDANQFNVWATNTSSPTSVKLVLNNDGNLVLHEVHGGAILWQSFNYPTNTLLPGQTLTRDTALVSSRSESNLSSGFYKLFFDKDNVLHLLYDGFTISSFYWPDPWKLVWADRFTYNASRLAVLDVLGNFSSTDNYHFMTSDYGAVLQRRLSIDYDGNIRVYSRKHMGEKWYVSWQAKQQPCKIHGTCGPNSICSNDPYSGRKCSCLPGYKVKNESDLSYGCEAEFRLSCNKNESHFRYFNHVEFFGYDFHYTQNSSYKQCEDLCSQLCDCVGFQYSFKKETGYADCFPKTMLLNGYRSPAFEGAIYLKLPKGSSFSHHLEEYVRNCSHTVNPIFLERGYVKGHEKMLVKVFLWFVCVIAVIEVVGISIIWSYLTISKKKSSIDQGYGLTTSGFRKFSYSELKKATNGFSQEIGRGGGGIVYKAILSDHRVAAVKRLNEANQGESEFLAEVSIIGRLNHMNLIEMWGYCTEGKHRLLVYKYMENGSLAENLLSETLDWKKRYDIALGTAKGLAYLHEECLEWILHCDIKPQNILLDFNFEPKIADFGLSKLQNRNNINNANFSTIRGTRGYMAPEWIFNLPITSKVDVYSYGIVVLEMITGKSPSMNIDIAEGAETHHGRLVTWVRERKSKGSTMASWVEEIIDPTIEGNYDLNKMEILSRVALDCVEEEKDVRPNMSQIVEMLQNPEKYCQH 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00494 795 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Bva12g00494 795 CDD B_lectin 31 150 IPR001480 -
Bva12g00494 795 ProSiteProfiles PAN/Apple domain profile. 332 414 IPR003609 -
Bva12g00494 795 Pfam Protein kinase domain 512 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00494 795 ProSitePatterns Protein kinases ATP-binding region signature. 515 537 IPR017441 GO:0005524
Bva12g00494 795 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 8 790 - -
Bva12g00494 795 Gene3D - 27 149 IPR036426 -
Bva12g00494 795 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 198 IPR036426 -
Bva12g00494 795 Gene3D Transferase(Phosphotransferase) domain 1 584 794 - -
Bva12g00494 795 PIRSF SRK 1 794 IPR024171 GO:0004674
Bva12g00494 795 Pfam S-locus glycoprotein domain 243 315 IPR000858 GO:0048544
Bva12g00494 795 CDD PAN_AP_plant 330 413 - -
Bva12g00494 795 Pfam D-mannose binding lectin 75 165 IPR001480 -
Bva12g00494 795 SUPERFAMILY Protein kinase-like (PK-like) 492 786 IPR011009 -
Bva12g00494 795 CDD STKc_IRAK 515 788 - -
Bva12g00494 795 SMART blect_4 32 150 IPR001480 -
Bva12g00494 795 SMART serkin_6 509 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00494 795 ProSiteProfiles EGF-like domain profile. 280 318 IPR000742 -
Bva12g00494 795 CDD EGF 283 312 - -
Bva12g00494 795 ProSiteProfiles Bulb-type lectin domain profile. 26 147 IPR001480 -
Bva12g00494 795 Gene3D Phosphorylase Kinase; domain 1 474 583 - -
Bva12g00494 795 ProSiteProfiles Protein kinase domain profile. 509 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00494 795 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 8 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00494 Bva-Chr12 6988881 6991777 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00494 491 786 Receptor kinase-like Gene Family AT3G58690 39.088 1.60e-65 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Bva12g00494 Pkinase 4.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00494 - - jre:108987254 976.467