Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00441 ATGAGCACCTTGGCTACAACTTTAAATGCTAGTGCTCCTCTGGAAATTTCATGGACACCAGAAGATGCAAGTATCCGATACAATGTTTATATGCACTTTGCTGAGCTCCAAATGTTAGCAAATAATGAGAAAAGAGCTTTCAACGTCATCCTCAATAGCCAGCCTCTAAATGTAACCATTGAACCAAAGTACCTAATTGTACACACTCAGATCTTAAGTGCAATTAGTggaggaaaaattgaaatagttCTTGAGAAGACTGAGGATTCGACCTTTCCTCCGATTTTAAACGCAGTTGAGTATTATATGGTAAAGGAGTTCCCACAATCAGAAACGGACCAAGAAGATGTTGATGCAATTACAAGTATCCAGTCAACTTATGGGTTGACAAAAAATTCCCAAGGAGATCCATGCATCCCTGAAGATTACTTGTGGGAAGGACTAAGTTGTACTTACAGTGGTTCTAATTCCCCCAGAAGTAGAGTTTTaattctagataataataactttaCAGGTCCACTTCCAACTGAACtgattgaaaaatcaaaaaaaggtGCACTGTCAATAAGCCGCTCTTTTCTGGACCTTCAAGAGGAGAAAAATATGACAGAAGAAAGGGATCCAAATGAAACATTAATGAAAATGCAGAAACGACAATATTCATGTTCTGATGTCATTAACATCACCAACAACTTTGATAAAATTCTTGGCAAAGGTGGATTTGGAACAGTTTACCTTGGCTTTATTGATGATATTCAAGTAGCTGTGAAGATGCTTTCTCCAGAATCAACTCAAGGTCATCAACAATTCCAAGCAGAGGTTAAACTCCTATTGACAGTTCATCATAGAAACCTAACTTCCCTTATAGGGTATTGCAATGAAGACACCCACAAGGGGCTTATCTATGAGTACATGGCTAACGGAAACTTACATGAGCATCTTTCAGGATTGGAATACTTACATAATGGTTGCAAGCTACCTATAATACATAGAGAcataaaatcaacaaacatATTGTTGAATGAACATTTTCAAGcaaaaatatcagattttgATCTACCTAAAACCATGAAAACATCATTTGGGGGAACTCAGACGTCAACACTAGTTGGTGGTACCCCGGGTTATATGGACCCCGAATTGCACATAACAGATAGAATAACAAATAAGAGTAATGTTTATAGTTTCGGAGTTGTTCTTTTGGAGTTAATCACAAATCAACAACCAGTTATAACAAGAAATCATGACATGGTTCACATAAGCCAATGGGTCAACTCCTTGGTTAATAATGGGGATATCAAGAAGATTGTTTACTCTGGGTTACATGGAGAATTTGACAGTAACTCAGCCTGGAAAGCTGTTGAATTAGCAATGGCTTGTGTGTCACCAAATTCCACGAGAAGGCCAACTATGAATGCCGTAGTGAATCAGCTTAAGGAATGTTTGGCAACAGCTCTACCTCGGACCAACCAAAGTGGTGTTAGTACAACAAGGTTAGAGGAACAGCCAATGGTGAATCTGGCTATAGATTCTATTCCCCAGGCAAGGTA 1550 0.3677 MSTLATTLNASAPLEISWTPEDASIRYNVYMHFAELQMLANNEKRAFNVILNSQPLNVTIEPKYLIVHTQILSAISGGKIEIVLEKTEDSTFPPILNAVEYYMVKEFPQSETDQEDVDAITSIQSTYGLTKNSQGDPCIPEDYLWEGLSCTYSGSNSPRSRVLILDNNNFTGPLPTELIEKSKKGALSISRSFLDLQEEKNMTEERDPNETLMKMQKRQYSCSDVINITNNFDKILGKGGFGTVYLGFIDDIQVAVKMLSPESTQGHQQFQAEVKLLLTVHHRNLTSLIGYCNEDTHKGLIYEYMANGNLHEHLSGLEYLHNGCKLPIIHRDIKSTNILLNEHFQAKISDFDLPKTMKTSFGGTQTSTLVGGTPGYMDPELHITDRITNKSNVYSFGVVLLELITNQQPVITRNHDMVHISQWVNSLVNNGDIKKIVYSGLHGEFDSNSAWKAVELAMACVSPNSTRRPTMNAVVNQLKECLATALPRTNQSGVSTTRLEEQPMVNLAIDSIPQAR 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00441 516 SMART serkin_6 230 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00441 516 PANTHER PUTATIVE-RELATED 1 159 - -
Bva12g00441 516 Pfam Protein kinase domain 233 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00441 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 328 340 IPR008271 GO:0004672|GO:0006468
Bva12g00441 516 Gene3D Phosphorylase Kinase; domain 1 201 304 - -
Bva12g00441 516 ProSitePatterns Protein kinases ATP-binding region signature. 236 257 IPR017441 GO:0005524
Bva12g00441 516 Pfam Malectin-like domain 1 104 IPR024788 -
Bva12g00441 516 ProSiteProfiles Protein kinase domain profile. 230 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00441 516 PANTHER OS07G0107800 PROTEIN-RELATED 205 516 - -
Bva12g00441 516 Gene3D Transferase(Phosphotransferase) domain 1 305 498 - -
Bva12g00441 516 PANTHER OS07G0107800 PROTEIN-RELATED 1 159 - -
Bva12g00441 516 PANTHER PUTATIVE-RELATED 205 516 - -
Bva12g00441 516 SUPERFAMILY Protein kinase-like (PK-like) 211 478 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00441 Bva-Chr12 6180995 6183928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00441 1 516 Receptor kinase-like Gene Family AT2G28970 36.785 2.86e-137 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Bva12g00441 Pkinase 5.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00441 - - gmx:100781785 543.502