Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00438 ATGTCAAAGTGTTTCCTCTTTGCTTTGCTAATTGGTCTAGCTCTTGCTGTTCTGAACCAAGCTCAAGATCAATCAGGCTTCATTAGCATAGATTGTGGCCTCCTCCCTGCAAATGCCCACTACAGTGAACCAAAGACAAAACTGAATTATATTTCAGATgccaattttataaatagtgGTATACGTAATATTATACCAGATGAAGTCCAAAAAGAGTATCAAAGGCAAATGTGGAATTTGAGAAGCTTTCCAGAACCAGAAGAGATAAGGAATTGCTACAGAATAAATGTTACACGTGGTTCTAAATATTTGATTCGAGCTAGTTTTTTATATGGAAACTATGATGGCTTAAATGATCCTCCAGTATTTGATCTTCACTTGGGGCCTAATTTTTGGGATACAGTACAAATAACCaatacaaataattgttttaattatgagATCATACACGTTCCTACACTTGATTATGTACATATCTGTTTGGTTAAGACAGGTTTTGGTACACCATTTATTACCTCTATAGAATTGAGGCCTctcaaaaataatacatatatcGTTGATTCTGGATCATTGGCACTCTGGAAGCGGGAGGATTTAGGTTCAACCAAAGCCTACAGGTTCGGTTTTGATGTCTATGATCGCTTCTGGTATTCGAATGGGGGTTGGGGTGGGAGTGAAACTGATTGGACAACATTAAATGTTACAATTCCTGTTAATTTCTTATGGAACAATGATTTCAAACTACCTGAAATTGTAATGAGCACCATGGTTACACCAGTAAAGGCTAGTACTCCTTTGAAATTTTCCTGGACACCAGCAAGTGCAAGTAATCAATACTATGTTTATATGCACTTTGCGGAGCTCCAAGAGTTACCAAAGAATGAGACAAGAGCATTCAATGTCATCCTCAATGGCCAGCTTCTAAACGCAACTATTGCACCAAAGTACCTAACCGCAGAGACACACTATACCAGAGAAGCATTTAGTGgagaaagaattgaaattcTTCTTGTGAAGACTGAGAAGTCAACCCTTCCTCCGATCTTAAACGCAATTGAGATTTATACAGTAAAAGAGTTCCCACAATCAGAAACACACCAAGAAGATTTTGATGCAATTACAAGTATCCGGTCAACTTATGCATTGAGAAAAAATTGGCAAGGAGATCCATGCAACCCTGTAGATTTCAGGTGGGATGGTCTAAATTGTAGTAATGATGGTTATAAAACCCCGAGAATTACAACTTTGAAGTTATCTTCAAGTGGATTGACAGGGGAGATAGATCCTTCCatttccaagttgaccatgttggAGAAGTTGGATTTATCAAACAATAGCTTAAATGGGGAAGTGCCTGATTTTCTATCTCAATTAGAGTTCTTGACAAGCCTAAATCTAGAGAATAATAACCTTACAGGTCCAATTCCCGCTGAACTGattgaaaaatcaagaagAGGTATATTGTCAATGAGTCTGAGCCAAAACCCATATCTATGTGATTCTCCTGCATGCACAAACATCaagaacaacaacaataaaagcAAGAATGCCACTGTTCCAGTAGTAGCATCAGTTTGTGggattttgatatttcttgCAGTTGTGGCAGTTCTATTCTGGACTCTTAAAAGGACAAAACCAAAACATATGACAATAGAAAGGGATCCAAATGACACATTAATGAAAATCCAGAAACGGCAATATTCATATTCTGATGTCATTAACATCACCAACAACTTTGATAAAATCATTGGTAAAGGTGGATTTGGAACAGTTTACCTTGGCTTTATTGATGATATTCATGTAGCGGTGAAAATGCTTTCTCCTTCATCAGCTCAAGGTTATCAACAATTCCAAGCAGAGGTTAAACTTTTGATGACAGTGCACCATAGAAACTTGACATCCCTTATAGGGTATTGTAATGAAGAAACCAACAAGGGGCTTATCTATGAGTACATGGCTAATGGGAACTTGAATGAGCGTCTTTCagGTAGACACAGCAAATCAAAGTTCTTGACTTGGGAAGACCGACTTCAGATATCTATTGACACAGCCCAAGGATTGGAGTACTTGCATAATGGTTGCAAGCCACCTATAACACACAGAGACATAAAATCTACAAACATCCTGTTGAATGAACATTGCCAAGCAAAAATATCTGATTTTGGTCTATCAAAAACTATGGTAACAACTTTGGGGGGAACTCAGTTGCCAAGTCTTGTTGGTGGTACCCCAGGTTATCTGGACCCTGAATTCTACAGAACAAGTAGATTAACATATCAGAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAGTTAATCACAAACCAACAACCAGtgatagaaagaaataatgagATGATTCACATAAGCCAATGGGTTAATTCCATGGTAACGAATGGGGATATAAAGCAGATTGTCTACTCCAGGTTACAAGGCGGATTTAACAGTAACTCTGCCTGGAAAGCAGTTGAAATAGCAATGGCTTGTGTATCACCAAATTCCAAGAGAAGGCCAACCATGACTGAGGTAGTGATTGAGCTTAAGGAATGTTTGGCAACAGCACTGCCTCTAACAAGCCAAAGTGGTGTTAGTGCAACAGGGTTACAGGAAGAGGTGATAATGAATCTATCGGTGGACACTACTCCCCTAGCAAGGTA 2663 0.3654 MSKCFLFALLIGLALAVLNQAQDQSGFISIDCGLLPANAHYSEPKTKLNYISDANFINSGIRNIIPDEVQKEYQRQMWNLRSFPEPEEIRNCYRINVTRGSKYLIRASFLYGNYDGLNDPPVFDLHLGPNFWDTVQITNTNNCFNYEIIHVPTLDYVHICLVKTGFGTPFITSIELRPLKNNTYIVDSGSLALWKREDLGSTKAYRFGFDVYDRFWYSNGGWGGSETDWTTLNVTIPVNFLWNNDFKLPEIVMSTMVTPVKASTPLKFSWTPASASNQYYVYMHFAELQELPKNETRAFNVILNGQLLNATIAPKYLTAETHYTREAFSGERIEILLVKTEKSTLPPILNAIEIYTVKEFPQSETHQEDFDAITSIRSTYALRKNWQGDPCNPVDFRWDGLNCSNDGYKTPRITTLKLSSSGLTGEIDPSISKLTMLEKLDLSNNSLNGEVPDFLSQLEFLTSLNLENNNLTGPIPAELIEKSRRGILSMSLSQNPYLCDSPACTNIKNNNNKSKNATVPVVASVCGILIFLAVVAVLFWTLKRTKPKHMTIERDPNDTLMKIQKRQYSYSDVINITNNFDKIIGKGGFGTVYLGFIDDIHVAVKMLSPSSAQGYQQFQAEVKLLMTVHHRNLTSLIGYCNEETNKGLIYEYMANGNLNERLSGRHSKSKFLTWEDRLQISIDTAQGLEYLHNGCKPPITHRDIKSTNILLNEHCQAKISDFGLSKTMVTTLGGTQLPSLVGGTPGYLDPEFYRTSRLTYQSDVYSFGVVLLELITNQQPVIERNNEMIHISQWVNSMVTNGDIKQIVYSRLQGGFNSNSAWKAVEIAMACVSPNSKRRPTMTEVVIELKECLATALPLTSQSGVSATGLQEEVIMNLSVDTTPLAR 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00438 887 Gene3D Transferase(Phosphotransferase) domain 1 653 862 - -
Bva12g00438 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Bva12g00438 887 CDD STKc_IRAK 584 851 - -
Bva12g00438 887 ProSitePatterns Protein kinases ATP-binding region signature. 584 605 IPR017441 GO:0005524
Bva12g00438 887 SMART serkin_6 578 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00438 887 PANTHER PUTATIVE-RELATED 11 887 - -
Bva12g00438 887 Pfam Protein tyrosine and serine/threonine kinase 580 848 IPR001245 GO:0004672|GO:0006468
Bva12g00438 887 ProSiteProfiles Protein kinase domain profile. 578 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00438 887 Pfam Malectin-like domain 30 357 IPR024788 -
Bva12g00438 887 Gene3D Phosphorylase Kinase; domain 1 560 652 - -
Bva12g00438 887 SUPERFAMILY L domain-like 367 501 - -
Bva12g00438 887 Gene3D Ribonuclease Inhibitor 370 488 IPR032675 -
Bva12g00438 887 PANTHER OS07G0107800 PROTEIN-RELATED 11 887 - -
Bva12g00438 887 Pfam Leucine rich repeat 411 471 IPR001611 GO:0005515
Bva12g00438 887 SUPERFAMILY Protein kinase-like (PK-like) 558 848 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00438 Bva-Chr12 6166170 6170978 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00438 1 887 Receptor kinase-like Gene Family AT1G51800 46.995 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Bva12g00438 Malectin_like 1.2e-106 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00438 - - gmx:100785345 1028.85