Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00429 ATGTCAAAGAGCAGTTCCCTCTTTGCTTTGCTTATTGTTCTAGCTCTTGCTGTTCTGAACCAAGCTAAAGATCAATCAGGCTTCATTAGCATAGATTGTGGTCTCAATGCAAATGGCCCCTATAATGACTCAGATACAAACCTAAATTTTACTTCAGATGCTAGTTTCGTAACTAGTGGTATGACTAATACTATAGAAGCTGATCTCAAAGGATCAACTACAGGATTTGGATACAGGTTCAATTATGACGTCTATGATCGCTACTGGGCTTCGGATGTGGTTGGTAATTATGTGAAACCATATAGTAAAATTCTTCCCGATTCCTTAAAGTCCAACGATTTCCAACGACCTGAAATTGTAATGAGCACCTTGGCTACACCTTTAAATGCTAGTGCTCCTCTGGAAATTTCATGGACACCAGAAGATGCAAGTATCCGATACTATGTTTATATGCACTTTGCTGAGCTCCAAATGTTAGCAAATAATGAGAAAAGAGCTTTCAACGTCATCCTCAATAGCCAGCCTCTAAATGTAACCATTGAACCAAAGTACCTCATCGTACACACTGAGATCTTAAGTGCAATTAGTggaggaaaaattgaaattgttctTGAGAAGACTGAGGATTCGACCCTTCCTCCGATTTTAAACGCAGTTGAGTATTATATGGTAAAGGAGTTCCCACAATCAGCAACGGACCAAGAAGATGATATGACAGAAGAAAGGGATCCAAATGAAACATTAATGAAAATGCAGAAACGacaatattcatattttgatGTCATTAACATCACCAACAACTTTGATAGAATTCTTGGCAAAGGTGGATTTGGAACAGTTTACCTTGGCTTTATTGATGATAGTCAAGTAGCTGTGAAGATGCTTTCTCCAGAATCAACTCAAGGTCATCAACAAATTCAAAGCAGAGTTCATCATAGAAACCTAACTTCCCTTATAGGGTATTGCAATGAAGACACCCACAAGGGGCTTATCTATGAGTACATGGCTAATGGAAACTTACATGAGCATCTTTCAGGTAAACACAGCAAATCAAAGTTTTTGACTTGGGAAGATCGACTTCAAATATCTATAGATGCAGCCCAAGGAATGGAATACCTACATAATGGTTGCAAGCCACCTATAATACATAGAGAcataaaatcaacaaacatATTGTTGAATGAACATTTTCAAGcaaaaatatcagattttggTCCATCCAAAATCATGAAAACATCATTTGGGGGAACTCAGACGTCAACACTAGTTGGTGATACCCCCGGTTATATGGACCCTGAATTACACATAACAGATAGAATAACAAATAAGAGTGATGTTTATAATTTCGGAGTTGTTCTTTTGGAGTTAATCACGAATCAACAACCAGTTATAACAAGAAATCATGACATGGTTCACATAAGCCAATGGATCAACTCCTTGGTTAATAATGGGGATATCAAGAAGATTGTGTACTCTGGGTTACATGGAGAATTTGACAGTAACTCAGCCTGGAAAGCTGTTGAGTTAGCAATGGCTTGTGTATCACCAAATTCCACGAGAAGGCCAACTATGAATGTGGTAGTGAATGAGCTTAAGGAATGTTTGGCAACAGCACTACCTCGGACAAACCAAAGTGGTGTTAGTACAACAAGGTTAGAGGAACAGCCAATGGTGAATCTGGCTATAGATTCTATTCCCCAGGCAAGGTA 1709 0.3727 MSKSSSLFALLIVLALAVLNQAKDQSGFISIDCGLNANGPYNDSDTNLNFTSDASFVTSGMTNTIEADLKGSTTGFGYRFNYDVYDRYWASDVVGNYVKPYSKILPDSLKSNDFQRPEIVMSTLATPLNASAPLEISWTPEDASIRYYVYMHFAELQMLANNEKRAFNVILNSQPLNVTIEPKYLIVHTEILSAISGGKIEIVLEKTEDSTLPPILNAVEYYMVKEFPQSATDQEDDMTEERDPNETLMKMQKRQYSYFDVINITNNFDRILGKGGFGTVYLGFIDDSQVAVKMLSPESTQGHQQIQSRVHHRNLTSLIGYCNEDTHKGLIYEYMANGNLHEHLSGKHSKSKFLTWEDRLQISIDAAQGMEYLHNGCKPPIIHRDIKSTNILLNEHFQAKISDFGPSKIMKTSFGGTQTSTLVGDTPGYMDPELHITDRITNKSDVYNFGVVLLELITNQQPVITRNHDMVHISQWINSLVNNGDIKKIVYSGLHGEFDSNSAWKAVELAMACVSPNSTRRPTMNVVVNELKECLATALPRTNQSGVSTTRLEEQPMVNLAIDSIPQAR 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00429 569 PANTHER PUTATIVE-RELATED 245 569 - -
Bva12g00429 569 PANTHER OS07G0107800 PROTEIN-RELATED 11 67 - -
Bva12g00429 569 PANTHER OS07G0107800 PROTEIN-RELATED 71 236 - -
Bva12g00429 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 381 393 IPR008271 GO:0004672|GO:0006468
Bva12g00429 569 ProSiteProfiles Protein kinase domain profile. 266 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00429 569 Pfam Malectin-like domain 73 224 IPR024788 -
Bva12g00429 569 Pfam Malectin-like domain 31 71 IPR024788 -
Bva12g00429 569 Gene3D Phosphorylase Kinase; domain 1 237 334 - -
Bva12g00429 569 SMART serkin_6 266 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00429 569 ProSitePatterns Protein kinases ATP-binding region signature. 272 293 IPR017441 GO:0005524
Bva12g00429 569 PANTHER PUTATIVE-RELATED 71 236 - -
Bva12g00429 569 Pfam Protein tyrosine and serine/threonine kinase 268 531 IPR001245 GO:0004672|GO:0006468
Bva12g00429 569 Gene3D Transferase(Phosphotransferase) domain 1 335 551 - -
Bva12g00429 569 PANTHER PUTATIVE-RELATED 11 67 - -
Bva12g00429 569 PANTHER OS07G0107800 PROTEIN-RELATED 245 569 - -
Bva12g00429 569 SUPERFAMILY Protein kinase-like (PK-like) 247 531 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00429 Bva-Chr12 6097173 6101159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00429 252 569 Receptor kinase-like Gene Family AT1G51890 50.926 7.20e-112 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Bva12g00429 PK_Tyr_Ser-Thr 5.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00429 - - gmx:100818475 435.647