Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00418 ATGCCACGGCGAGCCTTGACCGTACATGTCCAACTCCGAAATTTGCAgaagagcaaaagaaaaatcccagGAACAGGATTTGGGAATTTCACCCACTTGTCTTCCTCCATTGTCACCTCTTCATTTTGGTCAGAATACCATAGGAAACGCAAAGGCAGTGCTTCAGCTTTCAACCCTTTTCTTTGTCTCTGCAAGACTGGTATTATGGAGATATCCTTGTTAAAGTTGCTTGTTAATGGCATATCCTCATATTTGCATTTACCATATTCTGGGAATGTGAATTCAGAACTTGTCTCAAAGTATTACCAGAAGGCAGAAGAGATACTTAAGCTGATAAAGCCTATAATTGGTGCGATTGGTAATTCTGATTTAGCTTCTGATGCCGCACTTACTGCTATAATTGAAGAATTGGGTCAGGCTGTTGATGAATCGAGGGAGCTTTTTGAGAACTGGCATCCTTTTTCTAGCAAAGTTTACTTTGTTATGCAAGTTGAGACCTTGATATCTAGGATTCGGACTTTAGGACTCACAATGTTCGAGCAGCTGAAGGATTCCCATCAGTGTCTTCCTGATGAATTGAACTCTGGAGATCTCGAGTTCTACGTGCAGAAACTCAAGCATTTGGGGCATGAAGAAACATCTACAATCATTAAAGAAGCTATTAGGGAACAACTGGAAGGTGCAGGGCCTAGTTCAGACGTCTTGGCAAAACTTGCAGATGCTCTTGGGCTGAGGTCTAACCAGGAGGTTCTAATTGAGGCTGTGGCCCTTGTAAAGTTGAAGGAGAATGCTGAACAGGCTGATAGAACTGCTGAAGCTGAATATATTGATCAAATGGTTTCTCTTGTAAACCGTATGCATGAGCGTCTTGTTATGCTTGAGGAAGCACAAAGCAATTATCCAGTTCCTGTACCTCGTGATTTTTGCTGTCCTCTCTCTTTGGAATTGATGACAGATCCAGTCATTGTGGCATCTGGGCAAACATATGAGCGTGCTTTTATTAAGGAATGGATTGATCTTGAGCTTAATGTTTGTCCAAAGACAGGTCAAACTCTAGCTCACACCAATTTAATACCAAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAACGTGAAGCCAGTTGATCCTATAAAACCTACGAACTTAAGCCAAACATCTTCCCTTCATGTCCATGCAGAGTCTGGTGTAATTAGGGAATCACCTCTTTTTGCTCATTCTGGGGGCAACCGGCCGGTCTCACCTGAAGCAACTCACTCTCGTTCTTTCAGTTCACCAGGTAAGATCCTAACATCTTCTGGTGGAACCCACCGAGAGGGAACATCACCACTGCATCCCCGTTCAACTTCTGAAGGTTCCTTAAGTGCTGTGGCTAACGAGCAAAGTTTGGATATTGCAAGAATATCACTGACAGGCTCTGATGATAGGTCTGTTAGCTCAGATGAAAAGAGTGTTGATTCAGTTGGCCAACCGTCAATGTCACCATCTAGAGGGGAATCTTCCCATGTACTTTCCTCAGAACAGTCTCGGACCCATGTTACGACTGCTTCCAATTTCAGTTCACTTTCTAATGGCAATATTCATCATGGCACAGAGGGAGATGGAAACGGTGCTTCTCAGCATCCGGGCAATGATAGAGATTTGTCTGGGGAAGTAAATCCAGGGTCAGAGGCTGCTGTTACTAGTACAACAACTAATCCACCAAGAGAACCTGAGCTCTTACCTCAGTTTGTAGATTCTAGACCTCGAAGCCAGGCCATAGGACGGCGGCCAttagagagatttgttcctaGGATGGCATCTTCACCTGCTGTGGAGACAAGAGCTGATCTTTCTGCTATTGAAACCCAGGTTCGGAAATTAGTTGAGGAGTTGAAAAGCCCTTCGCTTGATGTTCAAAGAGATGCAACAGCAGAGCTCCGCCTTCTTGCTAAGCACAATATGGATAATCGGATTGCGATTGCAAACTGTGGAGCTATTAGCATTCTAGTTGAGTTACTCCAATCAAATGATACTAGGATACAGGAAAATGCTGTTACCTCGCTTCTCAACTTATCAATTAATGATAACAATAAAACTGCAATTGCAGATGCCGGTGCAATTGAGCCTCTGATTCATGTCCTTGAAACAGGCAGCCCAGAAGCCAAGGAAAATTCAGCTGCCACCCTTTTTAGCTTATCTGTGGTTGAGGAAAACAAGGTCAGGATAGGGAGGTCTGGGGCAATTAATCCACTAGTTGATTTATTAGGGAATGGAACACCTAGGGGAAGGAAAGATGCTGCCACtgctttgtttaatttgtcaatatTTCATGAAAACAAGGGTCGTATTGTGCAAGCTGGTGCTGTTAAGCACCTCGTTGATTTAATGGACCCAGCAGCCGGAATGGTTGACAAGGCAGTGGCTGTTTTGGCAAATCTTGCGACAATTCAAGAAGGAAGAGCTGCAATTGGTGCAGAAGGTGGGATTCCAGTCCTGGTTGAGGTTGTTGAGTTGGGTTCGGCTAGAGGAAAGGAGAATGCAGCAGCTGCCCTTCTGCATCTTTGTTCACACAGTAACCGATTTTTAAGCATGGTTCTCCAAGAAGGAGCCGTCCCACCATTAGTAGCTTTGTCCCAGTCAGGCACCTCAAGGGCCAGAGAAAAGGCGCTGGCACTCCTCAACTGCTTTCGAAGTCATAGACATGGTAATGGTGGGAGAGGCTG 2717 0.4365 MPRRALTVHVQLRNLQKSKRKIPGTGFGNFTHLSSSIVTSSFWSEYHRKRKGSASAFNPFLCLCKTGIMEISLLKLLVNGISSYLHLPYSGNVNSELVSKYYQKAEEILKLIKPIIGAIGNSDLASDAALTAIIEELGQAVDESRELFENWHPFSSKVYFVMQVETLISRIRTLGLTMFEQLKDSHQCLPDELNSGDLEFYVQKLKHLGHEETSTIIKEAIREQLEGAGPSSDVLAKLADALGLRSNQEVLIEAVALVKLKENAEQADRTAEAEYIDQMVSLVNRMHERLVMLEEAQSNYPVPVPRDFCCPLSLELMTDPVIVASGQTYERAFIKEWIDLELNVCPKTGQTLAHTNLIPNYTVKALIANWCESNNVKPVDPIKPTNLSQTSSLHVHAESGVIRESPLFAHSGGNRPVSPEATHSRSFSSPGKILTSSGGTHREGTSPLHPRSTSEGSLSAVANEQSLDIARISLTGSDDRSVSSDEKSVDSVGQPSMSPSRGESSHVLSSEQSRTHVTTASNFSSLSNGNIHHGTEGDGNGASQHPGNDRDLSGEVNPGSEAAVTSTTTNPPREPELLPQFVDSRPRSQAIGRRPLERFVPRMASSPAVETRADLSAIETQVRKLVEELKSPSLDVQRDATAELRLLAKHNMDNRIAIANCGAISILVELLQSNDTRIQENAVTSLLNLSINDNNKTAIADAGAIEPLIHVLETGSPEAKENSAATLFSLSVVEENKVRIGRSGAINPLVDLLGNGTPRGRKDAATALFNLSIFHENKGRIVQAGAVKHLVDLMDPAAGMVDKAVAVLANLATIQEGRAAIGAEGGIPVLVEVVELGSARGKENAAAALLHLCSHSNRFLSMVLQEGAVPPLVALSQSGTSRAREKALALLNCFRSHRHGNGGRG 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00418 905 Coils Coil 608 628 - -
Bva12g00418 905 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 703 745 IPR000225 GO:0005515
Bva12g00418 905 ProSiteProfiles U-box domain profile. 303 377 IPR003613 GO:0004842|GO:0016567
Bva12g00418 905 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 785 826 IPR000225 GO:0005515
Bva12g00418 905 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 662 704 IPR000225 GO:0005515
Bva12g00418 905 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 75 900 - -
Bva12g00418 905 SMART Ubox_2 307 370 IPR003613 GO:0004842|GO:0016567
Bva12g00418 905 MobiDBLite consensus disorder prediction 487 534 - -
Bva12g00418 905 SUPERFAMILY RING/U-box 295 381 - -
Bva12g00418 905 MobiDBLite consensus disorder prediction 559 574 - -
Bva12g00418 905 Pfam U-box domain 304 374 IPR003613 GO:0004842|GO:0016567
Bva12g00418 905 Gene3D - 600 901 IPR011989 -
Bva12g00418 905 MobiDBLite consensus disorder prediction 474 592 - -
Bva12g00418 905 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 744 786 IPR000225 GO:0005515
Bva12g00418 905 MobiDBLite consensus disorder prediction 407 459 - -
Bva12g00418 905 PANTHER U BOX DOMAIN-CONTAINING 75 900 - -
Bva12g00418 905 SMART arm_5 733 773 IPR000225 GO:0005515
Bva12g00418 905 SMART arm_5 692 732 IPR000225 GO:0005515
Bva12g00418 905 SMART arm_5 774 813 IPR000225 GO:0005515
Bva12g00418 905 SMART arm_5 651 691 IPR000225 GO:0005515
Bva12g00418 905 SMART arm_5 814 854 IPR000225 GO:0005515
Bva12g00418 905 CDD RING-Ubox_PUB 308 350 IPR045210 -
Bva12g00418 905 MobiDBLite consensus disorder prediction 417 459 - -
Bva12g00418 905 SUPERFAMILY ARM repeat 621 895 IPR016024 -
Bva12g00418 905 Pfam Armadillo/beta-catenin-like repeat 653 690 IPR000225 GO:0005515
Bva12g00418 905 Pfam Armadillo/beta-catenin-like repeat 735 772 IPR000225 GO:0005515
Bva12g00418 905 Pfam Armadillo/beta-catenin-like repeat 692 731 IPR000225 GO:0005515
Bva12g00418 905 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 380 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00418 Bva-Chr12 6004648 6011663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00418 264 905 U-box Gene Family AT2G23140 61.300 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00418 - - gmx:100811250 1159.82