LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g00413	ATGGACAATACGGTTCCATTCTCTTTTCCATTACTTTCATTCTTGCCATTGGCAACAATCACTCCTTTTGTGATGCCAATGATCATTGGAGCTCATTTCTATGGCCATAATCCATCCATAAATGACTCAGCAAGAGACTCTGATGGTCATGGAAGCCACACTGCCTCAACAGCAGCTGGAAACAAAGTAAGAGACGCAGTTTCTTTGGAGTTGCAAGAGGTACAGCAAGAGGAGGGGTCTCATCTGCAAGGATTTCTGTTTATAAATTTTGCAATTGGTTCTTTTCATGCAATGGCAAAAGGGATTCTCACTGTTCAGTCTGCAGGTAACTATGGTCCTGGTCGAGGATCAATATCAAGCATTGCACCTCGTTTACCAAGTGTTGCAGTAAACACCATAGATCGTAGGTTTATTAACAAAGTCTCTCTTGGAGATGGAAGAACATTAGTTGGGAAATCAATAAATGGCTTCGCgtcaaatgggaaaaaattTCCCATTATTGATGGAGTGAAAGCTTCTCTTCCTCATTGTGAAGATCCACAATACTGTTATCCAATTTGTctggatgaagaaaaaataaagggaaaaatcCTTTTATGTCCTAAAAATGTAGATGGTGCAATTAGAGAGGGTTTTCTGCTTGGTCCATCTGGATTTATAGTATTGGAAGAGGATATTGTGGCTAACGTTGATCCCTTACCTTCATCATACGTAGATATTAATGCTCCTCTGattgcttctttctcttctcgtGGACCCAATGAGAAGGTTCCAGAAATTATGAAGCCAGATATAAGTGCTCCAGGAGTAAATATCTTGGCTGCATATCCACCGATTTATCCACCCTCCCATGTTGATGGAGATAAAAGATCTGTCAATTACAGCATAATATCTGGGACCTCGATGTCATGTCCACATGTGGCTGGTGTAGCTGCATACATCAAGAGTTTTCACCCTGATTGGTCTCCGGCAGCCATTAAATCTGCAATCATGACCACAGCAAAGCCAATGAATAGCAGTGAAGATAAAGAATTTGCCTATGGGTCAGGTCACTTGAACCCAATTGAAGCTGTGAATCCTGGTCTGGTTTATGAACTTTCAAGAGACGACTATGTGGAAATGCTTTGCAATATTGGATACAACACATA	1148	0.3885	MDNTVPFSFPLLSFLPLATITPFVMPMIIGAHFYGHNPSINDSARDSDGHGSHTASTAAGNKVRDAVSLELQEVQQEEGSHLQGFLFINFAIGSFHAMAKGILTVQSAGNYGPGRGSISSIAPRLPSVAVNTIDRRFINKVSLGDGRTLVGKSINGFASNGKKFPIIDGVKASLPHCEDPQYCYPICLDEEKIKGKILLCPKNVDGAIREGFLLGPSGFIVLEEDIVANVDPLPSSYVDINAPLIASFSSRGPNEKVPEIMKPDISAPGVNILAAYPPIYPPSHVDGDKRSVNYSIISGTSMSCPHVAGVAAYIKSFHPDWSPAAIKSAIMTTAKPMNSSEDKEFAYGSGHLNPIEAVNPGLVYELSRDDYVEMLCNIGYNT	382

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g00413	382	CDD	PA_subtilisin_like	141	239	-	-
	Bva12g00413	382	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	238	382	IPR045051	-
	Bva12g00413	382	ProSitePatterns	Serine proteases, subtilase family, serine active site.	299	309	IPR023828	-
	Bva12g00413	382	Pfam	Subtilase family	94	349	IPR000209	GO:0006508\|GO:0008236
	Bva12g00413	382	PRINTS	Subtilisin serine protease family (S8) signature	46	59	IPR015500	-
	Bva12g00413	382	PRINTS	Subtilisin serine protease family (S8) signature	298	314	IPR015500	-
	Bva12g00413	382	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	28	71	IPR045051	-
	Bva12g00413	382	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	90	237	IPR045051	-
	Bva12g00413	382	PANTHER	SUBTILISIN-LIKE PROTEASE SBT4.3	28	71	-	-
	Bva12g00413	382	PANTHER	SUBTILISIN-LIKE PROTEASE SBT4.3	90	237	-	-
	Bva12g00413	382	SUPERFAMILY	Subtilisin-like	36	359	IPR036852	GO:0004252\|GO:0006508
	Bva12g00413	382	ProSiteProfiles	Serine proteases, subtilase domain profile.	1	358	-	-
	Bva12g00413	382	Gene3D	Peptidase S8/S53 domain	28	70	IPR036852	GO:0004252\|GO:0006508
	Bva12g00413	382	Gene3D	Peptidase S8/S53 domain	239	371	IPR036852	GO:0004252\|GO:0006508
	Bva12g00413	382	PANTHER	SUBTILISIN-LIKE PROTEASE SBT4.3	238	382	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g00413	Bva-Chr12	5969995	5971442	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g00413	28	382	Subtilisin-like Serine Gene Family	AT5G59190	42.857	5.23e-102	315

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g00413	-		-	qsu:111998347	337.035