Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00396 ATGGGAGGTTCCTCACCTTGTGCTTCCTGCAAGTTGTTGAGACGCCGCTGCACCAAGGAGTGCATCTTTGCCCCTTTTTTTCCACCTGATGATCCTCACAAGTTTGCCATTGTGCACAAGGTCTTCGGCGCGAGCAATGTCAGCAAAATGTTGCAGGAGCTTGCAGTTCATCAAAGAGCAGATGCTGTGAGCAGTCTAGTTTACGAAGCAAATGCTCGAGTAAGAGACCCAGTTTATGGATGTGTTGGGGCAATATCATTTCTACAGAGCCAAGTTTCACAATTGCAAATGCAGCTAGCAGTTGCACAGACAGAGATTCTTTGCATCCAGACGCAGCAGGTGCCTGCCTTGCCACCCCAGATTGACCAAGATGGCAAATCGTTTCTCTTATCAGATACCAATTATGAAAGCACTCCCCAGTATTATAGCTTtgcttcttctgcttcttcttcttcttcttactCCAGCCATGTACTCCAAGATCCTCCTAAAAGAGAGTCCTTTTggactta 512 0.4355 MGGSSPCASCKLLRRRCTKECIFAPFFPPDDPHKFAIVHKVFGASNVSKMLQELAVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQSQVSQLQMQLAVAQTEILCIQTQQVPALPPQIDQDGKSFLLSDTNYESTPQYYSFASSASSSSSYSSHVLQDPPKRESFWT 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00396 170 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Bva12g00396 170 Coils Coil 85 105 - -
Bva12g00396 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 122 - -
Bva12g00396 170 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Bva12g00396 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 122 - -
Bva12g00396 170 MobiDBLite consensus disorder prediction 147 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00396 Bva-Chr12 5885889 5886748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00396 3 170 AS2 family AT2G30130 65.608 2.85e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Bva12g00396 LOB 2.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00396 - - jre:108997001 244.973