Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00365 ATGGAATCCGACTTCGAGTTGGCCTTTCGTCTCCAGTTGCAAGAAGCACTCGCCGCCTCCCTCGTTTTGGAACCCTCCTCCccctcttctccttcttcctccATACAAGATTCCCAACTCACAAAACGCTTTGACGTTTCAAAGGTCACAACCCTTCAATCCGAGCAACTGTCAAAGCTCGAGCAAGAAATCAAGGACCGAGAGCAGAGAGAGATCGAAACGCGTAAACTCAAGGAGGACCCCACCCGTCGGATACATGATCGGAAGTTTGCAAAGGAGATTCTGACAATTCCTGATGATGATTGGAGTGAATGGGGTAGATATTTCGAGAAACCCTTGAGCAGCAAGGGTTGCTCGAGCTCAAAGCCGGAAACTTTAGCCGGCGACGCCGTTTTTAGATTGTACTTCAAAGTCATGGTGAGCGACGAGAGAATCAGGGGTGAAAAGAGTGTTTTAGCGGGAATTGGAATTGCTATCTGTGACCCCTTAGACAATTTGATATTCGAGGTGAGGAAGCCACTGCTTGGGAATGGAATGAGCAAGAATGCTGCAGAGGCTAAGGCTTTAATTGAAGGCCTTAACGCTGCGATTGCTTTGGACTTGAACCGTATCACGTATTATTGTACTTACTATCCACTTTACCAATTTGTAAGTGGAAGATGGACTCCGAAACAGCGGAAGATTGCCACGCTAGTCAATCAGATTACTCTGCTTCGAAGAAAATTTACATACTGCAATCCAAAGCTTGTGACTGGACAGGATgttaaatttgcatttaaGTTTGCAAAAGATGCAATTATGTCACAGATGAAAATGCCCGCAGAATCTATCTGTACAAAGAATCTCAATGAGACTTGTGCCATATGTTTGGAAGATAATGACGTTAGTCACATCTTTTCAGTTGATGGCTGTCAACACCGGTATTGCTTTTCTTGCATGAAACAACATGTGGAGGTGAAGTTGCTTCATGGAATGGTGCCAAAATGCCCTCATGAAAAATGCAATTCTGACCTTGTCATTGACAGCTGCAGGAAATTCTTGACTCATAAATTAATCGAGACCATGCAGAACCGAATAAAGGAAGCATCAATTCCTGTTTCTGAGAAAATTTACTGCCCCTATCCAAGATGCTCTGCATTAATGTCAAAAACTGAGCTTTTGGAGTACgctaaaaatatgtttggcGACTCTGAACAATCAAGACCCAAGAAATGCATAAAATGTCATGGTCTTTTCTGTCTCAGCTGCAAGGTCCCTTGGCATAGTGGTCAGACATGCAGAGATTACAAAATGTTGAATCCTAACCCTCCCGCCGAAGATGTGAAGCTGAAGTCTCTGGCGTCAAGAAGTCTATGGCGGCAGTGTGTGAAGTGCAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGCGGCTATGAATTTTGCTATAACTGTGGAGCTGAATGGAGGAACAAGAAAGCAACATGTTCTTGTCCACTTTGGGATGAGGACAATATTTGGTTGGAGGATCACGAGAGGGACTtggaagaagaacaagaacaagagGAATACTATGATTCTGATAGTTCTTATGAGTTTTATTA 1598 0.4168 MESDFELAFRLQLQEALAASLVLEPSSPSSPSSSIQDSQLTKRFDVSKVTTLQSEQLSKLEQEIKDREQREIETRKLKEDPTRRIHDRKFAKEILTIPDDDWSEWGRYFEKPLSSKGCSSSKPETLAGDAVFRLYFKVMVSDERIRGEKSVLAGIGIAICDPLDNLIFEVRKPLLGNGMSKNAAEAKALIEGLNAAIALDLNRITYYCTYYPLYQFVSGRWTPKQRKIATLVNQITLLRRKFTYCNPKLVTGQDVKFAFKFAKDAIMSQMKMPAESICTKNLNETCAICLEDNDVSHIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEKCNSDLVIDSCRKFLTHKLIETMQNRIKEASIPVSEKIYCPYPRCSALMSKTELLEYAKNMFGDSEQSRPKKCIKCHGLFCLSCKVPWHSGQTCRDYKMLNPNPPAEDVKLKSLASRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWRNKKATCSCPLWDEDNIWLEDHERDLEEEQEQEEYYDSDSSYEFY 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00365 532 Coils Coil 57 77 - -
Bva12g00365 532 SUPERFAMILY RING/U-box 441 503 - -
Bva12g00365 532 Pfam Reverse transcriptase-like 148 265 IPR002156 GO:0003676|GO:0004523
Bva12g00365 532 Gene3D - 424 531 - -
Bva12g00365 532 Pfam IBR domain, a half RING-finger domain 443 494 IPR002867 -
Bva12g00365 532 Pfam IBR domain, a half RING-finger domain 367 426 IPR002867 -
Bva12g00365 532 SUPERFAMILY RING/U-box 284 365 - -
Bva12g00365 532 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 14 507 - -
Bva12g00365 532 ProSiteProfiles Zinc finger RING-type profile. 286 333 IPR001841 -
Bva12g00365 532 SMART ibrneu5 353 426 IPR002867 -
Bva12g00365 532 SMART ibrneu5 439 496 IPR002867 -
Bva12g00365 532 ProSitePatterns Zinc finger RING-type signature. 304 313 IPR017907 -
Bva12g00365 532 Gene3D - 140 273 IPR036397 GO:0003676
Bva12g00365 532 ProSiteProfiles TRIAD supradomain profile. 282 506 IPR044066 -
Bva12g00365 532 MobiDBLite consensus disorder prediction 513 532 - -
Bva12g00365 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 366 IPR013083 -
Bva12g00365 532 Coils Coil 506 526 - -
Bva12g00365 532 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 14 507 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00365 Bva-Chr12 5686562 5689413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00365 127 485 C3H Transcription Factor Family AT2G19610 34.247 2.32e-68 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00365 - - qsu:112024501 726.472