Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00364 ATGGCCTCTTCTGGTAGCTTAGATACCTCTGTGAATTCCCACTCAAGCTTCAGTTTTTCTACTAACCCATTCATGACCACTTCGTTCTCCGACCTCCTTGCTTCTCCGACGGCCGACGACAACTCCGCCGCCGCCAGGAACTCAGTTAAGCCACGTGGGTTGTCGGAGCGTATAGCAGAACGAACTGGATCGGGTGTGCCGAAATTCAAGTCGATCTCTCCTCCGTCTCTGCCTCTCTCCCCGCCTGCCATTTCTCCGTCTTCTTATTTTGCTATCCCTGCTGGGTTGAGCCCAGCTGAGCTTCTTGACTCGCCGGTTCTTCTAAACGCTTCTAACATTCTGCCATCTCCAACTACTGGAGCATTTGCTGCTCAGGCCTTGAATTGGAAGAACAATTCTGAAGCAAACCAACAAAGGATCAAGGAAGAGGACAAGAACTTCTCAAGTTTCTCTTTCCAACCTCATCCAAGGCCTCCTGCTCCATCCACAACTACTTATCAATCTTCAGCAACCGCAATCCAAACTCAACAGGCATGGAGTTTTCAGGAAAACATCAAGCAAGATAATTTCTCAAAGGGTATGGTAAAAACCGAAAACTCTTCGATGCAGAGCTTTTCTCCTGAAATTGCCAGTGTCCAAACAAACAATAGCAGTGGATTCCAATCTGATTACAGTAACAATTACCAGCCTCAATCTCAAACATTGAGCAGAAGGTCAGATGATGGATACAATTGGAGAAAATATGGGCAAAAGCAAGTGAAAGGAAGTGAAAACCCAAGAAGTTACTATAAATGCACATACCCCAATTGCCCAACAAAGAAGAAGGTTGAGAGGTCATTAGATGGGCAAATTACTGAGATAGTTTATAAGGGTACCCATAACCATCCCAAGCCTCAATCTACCAGGAGGAACTCATCATCCGCATCTTCTCATGCACTTGCACCTTCAAATCCTGTCACTGCTGAAATCCCAGATCAATCATTTGCCTCCCATGGCAGTGGACAAATGGATTCGGTTGCAACACCTGAGAACTCATCAATATCAATGGGAGATGATGATTTTGAGCACAGTTCCCAGAAGAGTAAATCAGGTGGAGATGAATTGGATGAAGATGAACCTGATGCCAAAAGATgGAAAATGGAGGGTGAAAATGAGGGGATATCAGCACCTGGAAGCAGAACAGTGAGAGAACCCAGAGTTGTAGTTCAAACAACCAGTGACATAGATATTCTAGATGATGGGTATAGATGGAGAAAATATGGGCAGAAAGTGGTCAAGGGCAATCCAAATccaagGAGTTATTACAAGTGCACTCACCCTGGATGTCCAGTGAGGAAGCACGTGGAGAGAGCCTCCCATGATCTAAGGGCAGTGATCACCACCTATGAAGGAAAGCACAACCATGACGTGCCGGCAGCCCGAGGCAGCGGCGGCTCCTCTATGAATAGACCTATGGCAGGCATTTCCACAAACACCTCAACTGCAATAAGGCCAGCAGCCTTGACCCACCACTACACTAACAATTCTATTCAGAATCTCAGAGCACCACAACCAGTACCACCACCAGCAGCAACTGAAGGGCAGTCGCCCTTCACTCTAGAGATGCTGCAGAGCCCTGGGAGTTTTGGGTTCACAGGGTTTGATCAGAATGCAATAGGTTCATACATGAACCAACAATCACTATCTGacaatttgttttcttccaaAGCCAAGGAGGAGCCAAGAGATGACAATGTCTTCTTTGAATCTCTGCTATGCTG 1760 0.4585 MASSGSLDTSVNSHSSFSFSTNPFMTTSFSDLLASPTADDNSAAARNSVKPRGLSERIAERTGSGVPKFKSISPPSLPLSPPAISPSSYFAIPAGLSPAELLDSPVLLNASNILPSPTTGAFAAQALNWKNNSEANQQRIKEEDKNFSSFSFQPHPRPPAPSTTTYQSSATAIQTQQAWSFQENIKQDNFSKGMVKTENSSMQSFSPEIASVQTNNSSGFQSDYSNNYQPQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSASSHALAPSNPVTAEIPDQSFASHGSGQMDSVATPENSSISMGDDDFEHSSQKSKSGGDELDEDEPDAKRWKMEGENEGISAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGGSSMNRPMAGISTNTSTAIRPAALTHHYTNNSIQNLRAPQPVPPPAATEGQSPFTLEMLQSPGSFGFTGFDQNAIGSYMNQQSLSDNLFSSKAKEEPRDDNVFFESLLC 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00364 586 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 47 561 IPR044810 GO:0003700
Bva12g00364 586 Gene3D WRKY domain 224 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva12g00364 586 ProSiteProfiles WRKY domain profile. 240 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g00364 586 SUPERFAMILY WRKY DNA-binding domain 403 471 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva12g00364 586 Gene3D WRKY domain 398 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva12g00364 586 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 47 561 - -
Bva12g00364 586 ProSiteProfiles WRKY domain profile. 406 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g00364 586 Pfam WRKY DNA -binding domain 240 296 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g00364 586 Pfam WRKY DNA -binding domain 412 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g00364 586 MobiDBLite consensus disorder prediction 1 21 - -
Bva12g00364 586 MobiDBLite consensus disorder prediction 35 76 - -
Bva12g00364 586 SUPERFAMILY WRKY DNA-binding domain 238 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bva12g00364 586 MobiDBLite consensus disorder prediction 294 348 - -
Bva12g00364 586 MobiDBLite consensus disorder prediction 289 394 - -
Bva12g00364 586 MobiDBLite consensus disorder prediction 196 244 - -
Bva12g00364 586 MobiDBLite consensus disorder prediction 196 239 - -
Bva12g00364 586 MobiDBLite consensus disorder prediction 349 383 - -
Bva12g00364 586 SMART WRKY_cls 411 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bva12g00364 586 SMART WRKY_cls 239 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00364 Bva-Chr12 5677524 5680654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00364 66 585 WRKY Transcription Factor Family AT2G38470 46.729 6.08e-123 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Bva12g00364 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00364 K13424 - gmx:100127393 833.558