Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00362 ATGTTCTCAGTAGACATACCTCCTAATCAGACCATATACATTAAGAATCTCAATGAAAAGATCAAGAAAGAAGAGTTAAAGAGGTCACTCTATTGCTTGTTCTCACAATACGGAAGGATTTTGGATGTTGTTGCTCTAAAGACACCCAAGCTTAGAGGACAAGCGTGGGTTTGTTTTAGTGAAGTAACTGCTGCCAGTAATGCAGTGCGACAAATGCAAAACTTCCCATTTTATGACAAACCTATGCGAATTCAATATGCAAAAACAAAGTCAGATTGCATAGCGAAAGAAGAGGGAAGTTATGTTCCaagggaaaagaagaagaagcaagaagaaaaagCTGAAAGAAAGCGAAGGACTGAAGAGGCACAGCAATCTGCTACAGCTAATGGTACACATGGTGCCAGTAACGGTGGTCCAGCGGCTACTTTCCGGCAAGGACCAAATGCCCAAGAAGCAACTGCTCCTAACAACATTTTGTTCATAGAGAATTTGCCCCATGAAACAACAAGTAGAATGCTTGAGATGCTCTTCCAACAATTTGCAGGCTTTAAGGAAGTGCGTTTGATTGAGGCAAAGCCAGGCATTGCATTTGTAGACTTTGAAGATGAAGTACAGTCCTCTGTGGCCATGCAAGCTCTTCAAGGCTTCAAAATTACCCCTCAGAATCCCATGATCATAAACTTTGCCAAGAAGTA 698 0.3997 MFSVDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRTEEAQQSATANGTHGASNGGPAATFRQGPNAQEATAPNNILFIENLPHETTSRMLEMLFQQFAGFKEVRLIEAKPGIAFVDFEDEVQSSVAMQALQGFKITPQNPMIINFAKK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00362 232 CDD RRM1_U1A_like 11 88 - -
Bva12g00362 232 Gene3D - 147 232 IPR012677 -
Bva12g00362 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 219 IPR000504 GO:0003723
Bva12g00362 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Bva12g00362 232 SUPERFAMILY RNA-binding domain, RBD 147 231 IPR035979 GO:0003676
Bva12g00362 232 MobiDBLite consensus disorder prediction 98 123 - -
Bva12g00362 232 SUPERFAMILY RNA-binding domain, RBD 5 101 IPR035979 GO:0003676
Bva12g00362 232 CDD RRM2_U1A_like 156 227 - -
Bva12g00362 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 5 232 - -
Bva12g00362 232 Gene3D - 4 118 IPR012677 -
Bva12g00362 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Bva12g00362 232 MobiDBLite consensus disorder prediction 98 149 - -
Bva12g00362 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 232 IPR000504 GO:0003723
Bva12g00362 232 SMART rrm1_1 11 85 IPR000504 GO:0003723
Bva12g00362 232 SMART rrm1_1 159 228 IPR000504 GO:0003723
Bva12g00362 232 MobiDBLite consensus disorder prediction 124 149 - -
Bva12g00362 232 Coils Coil 104 126 - -
Bva12g00362 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 5 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00362 Bva-Chr12 5658713 5661711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00362 6 232 Eukaryotic Initiation Factors Gene Family AT1G71770 21.030 3.83e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00362 K11094 - gmx:100805822 393.66