Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00326 ATGCTAGAAATGCGCGGTCTTAAGCTCACAGAGCGTTTCAAGAGCACCCAAGTTCATGCATTCAATTCTTCAGAAACCACTGGCAGCAGCAGCAATAATAAAACCTGTGTGTTAGCTACTGGGGCTAAGCTTAATAGACAGCGAATCATATCATTTGTGTCAAAACCCAAATCTAGAAACTCAACCAAATCAGCAATTGAaaatcttcttccttttcaacTCCCTTCAACTGAGCTCCTTGAACCCTCTATAGACCCTTTTCTTAAGCCTATCAATCTTGTTGAGACTTTGGCAGAGCTCTATCACAGGTTAGAGAGTTGCACACAATCCCAGAAAGCATCATTATGCATCGAGCAGTACTCGTTGTTGCGCAGCCTCGGAGACCAGAAGCTGCTACGTCGTTGCCTCCGCGCGGCGCGTCAGAACGCCGAGGATTTGCTCTCGAAGGTTGTTCTCTCGGCATGGTTGCGTTACGAAAGGAGGGAGGATGAGCTCGAGGATGTTTCCTCTATGGAATGCGGTGGCTATGTTCTCGAATGCCCAAAGGCCAGTTTGGTATCTGGGTATTGTCCCATTTCAATCAATGATCACTGCCAATGTCTTGAAGACCCAGTTGAGGGAAGAACTAACACATCAATAAGTACTGAAAATGTGTCTTTACCTGATGAGGAAAGTGACGTTTCTTTTTGCATTGGCAGTGAGGAAATCCATTGTGTACGGTATAGAATGGCAGCACTATCAGACCCATTTAAGGTTATGCTGTATGGTAGTTTTAAAGAGTCTAAGATGAAAAAGATTGATTTTTCACAAAATGGGATATGCCCAATGGGGATGAGAGCTGTGGAATTATATAGTAGGACTAAAAGGTTGGACCTTTTCTGTCCCAAGACTGTTTTGgagcttctttcttttgcaaatAGGTTCTCTTGTGAGGAGATGAAGTCTGCTTGTGATGCCCATTTAGCTTCTTTTGTTGATAATGTTGAAGATGCTTTGATTCTTATTGACTATGGATTGGGAGAAAGAGCGACCCTTCTTGTGGGGGCATGCTTACAGGTGTTGTTAAGAGAGCTTCCGAAGTCCCTGTATAATTCGAAAGTGATCAAGATATTGTGTACCTTTGAGGCAAAGGAAAGGTTGGCCATGATGGGATATGCATCTTTCTTGCTGTACCATTTCCTGAGCCAGGTGGCTATGGAGGAAAGCATGGCCTCCAAAATGACAGTGATGTTGTTGGAGAGATTGGGAGAATGTGCTACAGAAAAATGGCAGAAGGGCCTTGCATTTCATCAGTTGGGCTGTGTGTTGCTTGAAAGGAAAGAATATAAAGATGCCCGACGATGTTTTGAGGCAGCAGCTGAGGCAGGCCATGTTTATTCTATAGCCGGTGTAGCCAGGGCCAAGCAAAAGCTTGGTCAACCATATTCAGCCTATAAATTATTGAGTTCTCTTATCTTTGAATATAAACCAGCTGGTTGGATGTATCAGGAGCGTGCTCTTTATAATATGGGAAGGGAAAAGACTGTTGATTTGGACATTGCAACTGAATTGGATCCGACACTTTCATTTCCCTATAAGTACAGAGCCCTGGCAATGGTAGAGGAGAAGCAGATAAAAGCAGGAATTTTGGAGCTAGACAAGATTATTGGATTTAAGCTCTCCCCGGATTGCCTTGAATTGAGAGCTTGGTTGTATATTGCACTTGAGGACTATGAAAGTGCTATGAGAGATATTAGAGCATTGTTAACTTTAGAGCctaattatataacttttcatGGGAGGATCTCAGGGCAATACTTGGTTCAGATACTCAACCATAAAGTTCAGGAAAAGAATCAAGCAGAATGCTGGATGCAACTATATGAACAATGGTCTTCTGTAGATGATATTGGTTCTCTGGCTATTATACATCAGATGCTGGAGAACGAACCGAAAAGGAGCCTGCTAGAGTTTCGTCAGTCCTTACTTCTTCTGAGGTTAAACTGCCAGAAAGCTGCAATGCGTAGTTTGCGGTTAGCCAGAAACCATTCCTGCTCTCTGCAAGAAAAGCTAATTTATGAAGGATGGATTCACTATGACACCGGCTATCGTGACGAAGCACTGTATAAGGCTGAGACTTCCATTGCAATTCAGAGATcatttgaagtattttttctaaaagcatATGTTTTAGCCGATGCAAATCTGGATTCTAAATCTTCTTCTTATGTTATCAAACTTCTGGAAGAAGCTCTTAAATGTCCTTCTGATGGCCTCCGCAAAGGACAAGCTTTGAACAACTTAGGGAGTATGTATGTTGATTGTGGCAAGCTGGATCTAGCAGAAAAATGCTACATGAATGCCCTTGCAATCAGGCACACAAGAGCTCATCAAGGTCTGGCACGTGTTTATCATCAAAAGAATCAACGTAAAGCTGCACATGATGAGATGACCAAGCTAATTGAGAAGGCTAAGAGCAATGCTTCAGCATATGAGAAAAGATCAGAATACTGTGACCGTGAGATGGCAAAGATTGATCTTGATATAACAACACAATTGGATCCTTTAAGGACTTATCCATACAGATATAGGGCAGCAGTGATGATGGATGAGCAAAAAGAAACCGAAGCTGTGCAAGAACTGACCAAGGCCATAAATTTTAAGCCTGACCTGCAAATGCTTCATCTGAGAGCTGCATTTTATGAGTCAGTGGGGGACCTATCTTCTGCTGTCCAAGATTGCCGAGCAGCTCTTTGCTTAGATCCAAACCACACAGACACACAAGATCTGTATCGAAGGGCACAAAAACTTAACTTTTA 2798 0.4167 MLEMRGLKLTERFKSTQVHAFNSSETTGSSSNNKTCVLATGAKLNRQRIISFVSKPKSRNSTKSAIENLLPFQLPSTELLEPSIDPFLKPINLVETLAELYHRLESCTQSQKASLCIEQYSLLRSLGDQKLLRRCLRAARQNAEDLLSKVVLSAWLRYERREDELEDVSSMECGGYVLECPKASLVSGYCPISINDHCQCLEDPVEGRTNTSISTENVSLPDEESDVSFCIGSEEIHCVRYRMAALSDPFKVMLYGSFKESKMKKIDFSQNGICPMGMRAVELYSRTKRLDLFCPKTVLELLSFANRFSCEEMKSACDAHLASFVDNVEDALILIDYGLGERATLLVGACLQVLLRELPKSLYNSKVIKILCTFEAKERLAMMGYASFLLYHFLSQVAMEESMASKMTVMLLERLGECATEKWQKGLAFHQLGCVLLERKEYKDARRCFEAAAEAGHVYSIAGVARAKQKLGQPYSAYKLLSSLIFEYKPAGWMYQERALYNMGREKTVDLDIATELDPTLSFPYKYRALAMVEEKQIKAGILELDKIIGFKLSPDCLELRAWLYIALEDYESAMRDIRALLTLEPNYITFHGRISGQYLVQILNHKVQEKNQAECWMQLYEQWSSVDDIGSLAIIHQMLENEPKRSLLEFRQSLLLLRLNCQKAAMRSLRLARNHSCSLQEKLIYEGWIHYDTGYRDEALYKAETSIAIQRSFEVFFLKAYVLADANLDSKSSSYVIKLLEEALKCPSDGLRKGQALNNLGSMYVDCGKLDLAEKCYMNALAIRHTRAHQGLARVYHQKNQRKAAHDEMTKLIEKAKSNASAYEKRSEYCDREMAKIDLDITTQLDPLRTYPYRYRAAVMMDEQKETEAVQELTKAINFKPDLQMLHLRAAFYESVGDLSSAVQDCRAALCLDPNHTDTQDLYRRAQKLNF 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00326 932 Gene3D Potassium Channel Kv1.1; Chain A 216 337 IPR011333 -
Bva12g00326 932 ProSiteProfiles TPR repeat profile. 755 788 IPR019734 GO:0005515
Bva12g00326 932 Gene3D Tetratricopeptide repeat domain 603 835 IPR011990 GO:0005515
Bva12g00326 932 SUPERFAMILY TPR-like 738 924 IPR011990 GO:0005515
Bva12g00326 932 Pfam Tetratricopeptide repeat 756 784 IPR019734 GO:0005515
Bva12g00326 932 Pfam Tetratricopeptide repeat 560 587 IPR019734 GO:0005515
Bva12g00326 932 PANTHER ETO1-LIKE PROTEIN 2 4 930 - -
Bva12g00326 932 PANTHER ETO1-RELATED 4 930 IPR044631 GO:0010105
Bva12g00326 932 SUPERFAMILY POZ domain 221 322 IPR011333 -
Bva12g00326 932 SUPERFAMILY TPR-like 424 592 IPR011990 GO:0005515
Bva12g00326 932 Coils Coil 807 827 - -
Bva12g00326 932 Pfam BTB/POZ domain 223 321 IPR000210 GO:0005515
Bva12g00326 932 SMART tpr_5 884 917 IPR019734 GO:0005515
Bva12g00326 932 SMART tpr_5 555 588 IPR019734 GO:0005515
Bva12g00326 932 SMART tpr_5 755 788 IPR019734 GO:0005515
Bva12g00326 932 SMART tpr_5 426 459 IPR019734 GO:0005515
Bva12g00326 932 Gene3D Tetratricopeptide repeat domain 836 931 IPR011990 GO:0005515
Bva12g00326 932 SMART BTB_4 225 325 IPR000210 GO:0005515
Bva12g00326 932 Gene3D Tetratricopeptide repeat domain 412 592 IPR011990 GO:0005515
Bva12g00326 932 SUPERFAMILY TPR-like 641 784 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00326 Bva-Chr12 5324229 5329831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00326 756 916 Glycosyltransferase AT3G04240 28.655 7.89e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Bva12g00326 BTB 6.9e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00326 - - gmx:100790527 1435.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00326 12 5324229 5329831 Bva12g00326 12 5324229 5329831 ECH