Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00303 ATGGCCCCTCAAGATCATCACCACAATTTTCAGTGGCACTTCATTGATATAAACCACTCGAACTTCCACTCCTATTGCCATGGCCTATTCCTCATTCTATTGTTCCTTAacattctcttcttcatcactGTCTTGTTCCTCTGCATCCACGTCTGCCACCGCCGCTTCATGGAGTCCACCGCCGTGGCCTCTCCGGCACCGCCACCGGCATGTCAATGGAACGGAGTTGTTCACTACACGTACAGCATGCACAATCCATTATCGGTGTCAGCAATGAGTTTATATGCTGAATCTAGTTCTGAATGCTGCATTTGTTTGAGTGTTTTccaagaagaagagaagctcAAGGTGTTGCCATGTGGGCATGCCTATCATTCTGAGTGTTTGGAAAAGTGGATATGTGCAAACCCTAGTTGCCCTCTGTGTAGGGCTTCATTGGTTCAATTAAATTCTCTAGGAAAATCTACCATTTCCAATTG 479 0.4238 MAPQDHHHNFQWHFIDINHSNFHSYCHGLFLILLFLNILFFITVLFLCIHVCHRRFMESTAVASPAPPPACQWNGVVHYTYSMHNPLSVSAMSLYAESSSECCICLSVFQEEEKLKVLPCGHAYHSECLEKWICANPSCPLCRASLVQLNSLGKSTISN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00303 159 SUPERFAMILY RING/U-box 80 149 - -
Bva12g00303 159 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 151 IPR044675 -
Bva12g00303 159 Pfam Ring finger domain 101 143 IPR001841 -
Bva12g00303 159 SMART ring_2 102 142 IPR001841 -
Bva12g00303 159 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 151 - -
Bva12g00303 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 156 IPR013083 -
Bva12g00303 159 ProSiteProfiles Zinc finger RING-type profile. 102 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00303 Bva-Chr12 5089461 5090062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00303 12 146 C3H Transcription Factor Family AT3G11110 34.307 2.79e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00303 - - lja:Lj0g3v0098519.1 120.553