Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00302 ATGGCCATGAATCCATTGAACCAAATGGTTCAGGGTATGTTCTCAGACAACAACAATGTTTTGCTTGCAGCTATTATTTCTCTGCTTCTGGTCATTCTCTTCGTGCTTCTTCTCCATGTTTATGCTAAATGGTTCTTGGCTCAGGCACAAGCACAAGCCCAAGCACGCCGCCGCCGCGGTCGCCGGAGAACGGTGACCGTTTCCGACGTTCTGGGTCCTGCTCGGTTCCACCACTTCCACAACCTCACCATTGAAGACTCACCCTTTTCGATTTCCCCAGCCAAAGGGCTCGATTCTTCTATCATCGCTGCGATTCCCCTTTTCGTATTCGAAGAAACAGAGGAAGGAGAGAAACAGATCAGGGATGAACAGGAATTATTGGAATGTGTTATTTGCTTGAGTTGCTTTGAAGATGGTGAAATTGGAAGAAGTTTACCCAAATGTGGGCATTGTTTTCATGTGGAATGCATAGACATGTGGCTGGGTTCACATTGCAATTGCCCAACTTGCAGAGCTCCCATTAATGGTGGGATTGTTGAGAGTGATTCTCAATTGGGTTCTGTCAATGgagattcttcttcttcttcagtgGTTGAGATTGTGATTGATTCTCCAAGCTCTGAGGTAAGTGAGAATGAGAATGGAAACGAGAGCAATGGGAGTGTTAATGTGAGTGCTGCTTCTGTTTCTGTATCAgaaatttcttcctctttgcTGGAAATGGGATGCACTTTGAAGAGGGTTCTAAGCAAAGTTTTCCCATCTTCTAATGCTATTCTGTTAGATTCTTG 791 0.4273 MAMNPLNQMVQGMFSDNNNVLLAAIISLLLVILFVLLLHVYAKWFLAQAQAQAQARRRRGRRRTVTVSDVLGPARFHHFHNLTIEDSPFSISPAKGLDSSIIAAIPLFVFEETEEGEKQIRDEQELLECVICLSCFEDGEIGRSLPKCGHCFHVECIDMWLGSHCNCPTCRAPINGGIVESDSQLGSVNGDSSSSSVVEIVIDSPSSEVSENENGNESNGSVNVSAASVSVSEISSSLLEMGCTLKRVLSKVFPSSNAILLDS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00302 263 Pfam Ring finger domain 128 171 IPR001841 -
Bva12g00302 263 SMART ring_2 129 170 IPR001841 -
Bva12g00302 263 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Bva12g00302 263 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 258 IPR044675 -
Bva12g00302 263 PANTHER - 4 258 - -
Bva12g00302 263 SUPERFAMILY RING/U-box 128 175 - -
Bva12g00302 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 176 IPR013083 -
Bva12g00302 263 CDD RING-H2_EL5_like 128 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00302 Bva-Chr12 5082118 5082909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00302 14 172 Rapid Response to Elicitors AT3G16720 35.849 2.48e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00302 - - adu:107473099 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00302 12 5082118 5082909 Bva12g00302 12 5082118 5082909 ECH