Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00296 ATGGCTTCTTGGGTGAGAGGGAAGTGTATCGGTAAGGGCGCGTTTGGCAGCGTTAGTATCGGAGTTTCCAAATCGGACGGTGGAGTGTTTGCGGTGAAGTCCGTGGATCGTCAGACCGGGCTTCCAGGTCAGTTGGAGGCGTTGGAGAATGAAATTCGGGTTCTCCGGGAGTTGTCGGCGTCGCCTTACGTGGTAGGTTATCTCGGCGATGATGTCACGTACGAGGTGGGTGCCACGACGTCGTACCGGAACCTGCATATGGAGTACTTGCCAGATGGCACCGTTGCTGAGTTGGCATCTCGAAATGGGAGGAAGGATGCTGACGTGGACGAGCGGTTAATAAGGTACTACACTTGGTGCCTTGTGCACGCGTTGAGATATGTACACTCCAGGGGCATCGTCCACTGCGATGTTAAAGGGAGGAACGTTCTGGTGGGGCCCAATGGCGGTATCGCGAAGCTCGCTGATTTCGGTTCCGCGGTGAAATTTGGCGGCGTTGGAGATCAGATGCTGCCACGTGGCACCCCGTTCTGGATGGCACCGGAGGTGATTCGCGGGGAATCTCAGGGCGCCGAGTCCGACGTCTGGTCGTTGGGCTGTACAGTGATCGAGATGGTCATCGGGAAACCGGCATGGGAGGACCACGGCGTTGACACGCTGAGTCGAATCGGTTACTCCGGCGACATTCCCGAATTCCCAAGTCAATTGTCGGAACTCGGCCACGATTTTCTGGGAAAGTGTCTCGGGAGAGAACCGAGCCAGCGGTGGAACTGTGATCAGCTACTGCAGCACCCATTTTTGTGCTCTACACCTCCCAATAAACTCGTGGAATCATCTCCACGGTGCGTTCTCGATTGGGATAACTCAGAATTCTCcgacgaagaagaagaaattggagTGAATTCCGTACAATTAGCCAACGACAGAATTGGTAAGTTAGCTACAAGCGAAAGGGTAGATTGGGAATCAGATGATTGGGTGGCGGTGAGGACAGTGGCAACCGACACAGAACCAACAACAGAAGCGAGTGCTGGTCCAGATGGAAGCAGTGGGGACCACGGGGAGTGGACAAATTTGGAATATCCGAGTTTTACGAGGGTAGAAAGGGAAGAAGAGGGGACAAGTTGGGGAGAATTGGATTCAAGGGCAAATCCGGAAATGGAAAAATTTGGTCGCAGGAGTTCAGTGGTGTGGCGGTACTGCGGTAGAGTTGGGTTTCCTCGTCGGTACGGGTCGCGAAATTCGGATTCAGATTTAGTgGTATCCCATGACCTACCAAAAGCCCAGGATCCAACTGAAACCACTTG 1307 0.5287 MASWVRGKCIGKGAFGSVSIGVSKSDGGVFAVKSVDRQTGLPGQLEALENEIRVLRELSASPYVVGYLGDDVTYEVGATTSYRNLHMEYLPDGTVAELASRNGRKDADVDERLIRYYTWCLVHALRYVHSRGIVHCDVKGRNVLVGPNGGIAKLADFGSAVKFGGVGDQMLPRGTPFWMAPEVIRGESQGAESDVWSLGCTVIEMVIGKPAWEDHGVDTLSRIGYSGDIPEFPSQLSELGHDFLGKCLGREPSQRWNCDQLLQHPFLCSTPPNKLVESSPRCVLDWDNSEFSDEEEEIGVNSVQLANDRIGKLATSERVDWESDDWVAVRTVATDTEPTTEASAGPDGSSGDHGEWTNLEYPSFTRVEREEEGTSWGELDSRANPEMEKFGRRSSVVWRYCGRVGFPRRYGSRNSDSDLVVSHDLPKAQDPTETT 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00296 435 ProSiteProfiles Protein kinase domain profile. 4 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00296 435 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Bva12g00296 435 MobiDBLite consensus disorder prediction 332 390 - -
Bva12g00296 435 CDD STKc_MAPKKK 3 267 - -
Bva12g00296 435 Gene3D Transferase(Phosphotransferase) domain 1 2 329 - -
Bva12g00296 435 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 2 351 - -
Bva12g00296 435 MobiDBLite consensus disorder prediction 364 390 - -
Bva12g00296 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Bva12g00296 435 SUPERFAMILY Protein kinase-like (PK-like) 4 293 IPR011009 -
Bva12g00296 435 SMART serkin_6 4 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00296 435 MobiDBLite consensus disorder prediction 406 435 - -
Bva12g00296 435 Pfam Protein kinase domain 6 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00296 435 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00296 Bva-Chr12 5016397 5020040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00296 4 375 MAP Kinase Kinase Kinase AT1G07150 55.467 2.52e-129 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Bva12g00296 Pkinase 2.8e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00296 12 5016397 5020040 Bva12g00296 12 5016397 5020040 ECH