Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00295 ATGTCTGTCTCCGTTGCGGTTTGCAACTCTCCCGTTTTCTCTCCATCGTCTTCTTTGTTCTACAGCAAAGCCTCGATGATCTCCTCTTCGCCTGAAGCTCTGACCTTGTCGTTGGCTCATCTGAAGTCAACATCTACGGCGTCGGCAACATCGCCTTCTTCTCCGGTGTCGCCGTTCAGGCTTCGGTTGCCCAAACCCCCATCTGGGCTTTCCAATTCGGGTTCGCCCTCTACTTCGGCGCCGTCGTCAACATCGCCGACCAGCACTGCATTGAAGAGGAAGAGGCCCGCGAGGCTTGATATACCCGTTAGTTCTCTGACTTTTGGGGCTCCGGCGACGCCATCATCTTGGCCAAGGGATGTTGTGGAAGTTGAAGGGCTGGGATTTTCGGTGTATTGTAAGAGGGGAAGGAGAGAGTTCATGGAGGACCGTTATTCAGCTGCTGTGAATCTTCAAGGAGAACCCAAACAGGCTTTCTTTGGTATCTATGATGGACATGGAGGTGCAAAAGCTGCTGAATTTGCTGCAGACAACTTAGAAAAGAACATCATGGACGAAATCGTGAGGAGAGATGAGATTGAGGTTGAGGAGGCAGTGAAGCATGGCTACCTGACCACAGATTCTGATTTCTTGAAGGAGGATCTCCATGGTGGCTCTTGCTGTGTAACAGCACTGATAAGGAACGGTAACCTCGTTGTCTCTAACGCCGGTGATTGCCGGGCAGTCATTAGCAGAGCCGGTGTTGCAGAAGCCCTCACATCCGATCACCGGCCATCGAGGGTAGACGAAAGGGACAGAATTGAGACCCTGGGTGGCTATGTTGACTTATGCCACGGTGTTTGGAGAATCCAAGGATCTCTAGCTATATCTAGAGGAATTGGAGATCGGCATCTCAAGCAATGGGTGACAGCAGAGCCAGAAACCAAAATTCTCCCCATCGAAGCCAATCATGAGTTGTTAATCTTAGCTTCAGATGGATTATGGGACAAAGTCAGTAATCAGGAAGCAGTCGAAATTGCTCGTCCCTTATGCATGGACCGCGACAGACCCCAATCAATGGCGGCCTGTAAGAAGCTGGCACAGTTGTCAGCCTCGCGTGGCTCTCTCGATGACACCAGTGTTATGATAATCAAATTGCAGCACTATGTTTG 1151 0.5065 MSVSVAVCNSPVFSPSSSLFYSKASMISSSPEALTLSLAHLKSTSTASATSPSSPVSPFRLRLPKPPSGLSNSGSPSTSAPSSTSPTSTALKRKRPARLDIPVSSLTFGAPATPSSWPRDVVEVEGLGFSVYCKRGRREFMEDRYSAAVNLQGEPKQAFFGIYDGHGGAKAAEFAADNLEKNIMDEIVRRDEIEVEEAVKHGYLTTDSDFLKEDLHGGSCCVTALIRNGNLVVSNAGDCRAVISRAGVAEALTSDHRPSRVDERDRIETLGGYVDLCHGVWRIQGSLAISRGIGDRHLKQWVTAEPETKILPIEANHELLILASDGLWDKVSNQEAVEIARPLCMDRDRPQSMAACKKLAQLSASRGSLDDTSVMIIKLQHYV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00295 383 Coils Coil 176 196 - -
Bva12g00295 383 ProSitePatterns PPM-type phosphatase domain signature. 159 167 IPR000222 GO:0043169
Bva12g00295 383 CDD PP2Cc 128 379 IPR001932 -
Bva12g00295 383 ProSiteProfiles PPM-type phosphatase domain profile. 128 379 IPR001932 -
Bva12g00295 383 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 382 - -
Bva12g00295 383 SMART PP2C_4 118 377 IPR001932 -
Bva12g00295 383 Gene3D - 122 383 IPR036457 -
Bva12g00295 383 PANTHER PROTEIN PHOSPHATASE 2C 3 382 IPR015655 GO:0004722|GO:0006470
Bva12g00295 383 MobiDBLite consensus disorder prediction 68 91 - -
Bva12g00295 383 MobiDBLite consensus disorder prediction 44 96 - -
Bva12g00295 383 Pfam Protein phosphatase 2C 129 371 IPR001932 -
Bva12g00295 383 SUPERFAMILY PP2C-like 126 380 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00295 Bva-Chr12 5003860 5005801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00295 1 383 PP2C-type Phosphatase Gene Family AT2G30020 65.500 6.30e-172 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00295 K17506 - gmx:100797934 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00295 12 5003860 5005801 Bva12g00295 12 5003860 5005801 ECH