Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00291 ATGCGGCATTCTCAGCGGCAATCTCAGAAGCATTCTCCAACGGTGGACGAAATGCAACGTAATTTTAGGAGTAGGAAGCGCAAGGGAGAGTCTGGAAATGGGAAAATGAAGCTTCTTGTCAATGAGAAAGTAGAGgtaAGGAGTGTGGAAAATGGCCTTCTCGGCTCTTGGCACCCGGCAACAGTTACCCAATGTGGAAATCTGCAACGACATGTCAGATATGACAACATTTTAACTGACGATGGATTAGATTATCTCATTGAGGTGATCGGTGTTCCTCCTGTTTTGGATGATGTTCCTTCATCAACTTGCAATGGACGTGGGTTCATTAGACCACTGCCTCCTTTGGTGGAGTTCGAGAAGCAGGGTCTTCGATATGGTCTCTGCGTGGATGTGAACTACCAGGAAGCTTGGAGGGAAGGAGTTATTTTTGACCGTGATGATGATATGGAGAAGAGGAGGATATTTTTCCCAGATGTAGGTGATGAAAAGAAGATTTGCATTGACCAATTGCGTATAACTCAAGACTGGGATGAAGTTACAGAAAACTGGGAGCGGCGAGGGAACTGGGTGTTTCTTGATGTTCTTGAGGAGTATGAACAGGCACAATATGTTCCAGTTTCGCCGAAGCAAATTTGGTATGATGTGAGAGCCAAAAAGGACTTTGACAAGATCTGGGACTGGACTTTTAAGGTGAAGAACTTGTGGAAAGACTTGGTGTTGGAAGAAATTGATAACTACCTAGCTCTTACAGTAAAAGAAGTTATCCCAGCCTTGGGAATTTCGAATAGGTTCTTGGAAAATGCACAGGGACCGGATTCAGTTGAACCTACTGCTGATGTCCATCATGATGCTAGTCCTAATAATTTATCTGGTTCCAATATTAGAAATACAACCAGTCCAAAGGAAAAGGATGATACTAGAAATGCTGCCATTCCAAAGGAAAAGGATGAATTCATACCTTTTATGGATATTGTTCCACGAGAACCCATTCGAAGGAGATATGATCTTTATCCCATAGATGGATTACCAACTCTTCATCTTGAAATAAGGTTAAATATTTCCCGCCCTGATAATGAAGTCTTGCAGCAGGATGAACATGTGCCTCCCGTTGAAGAAATGTTATCTCAGAATCCAGAAAAACCTCCCTGCAACAATTCTGGGGAAGCTTCTGATTCTAGATGTTTACAAAAAGGCAGAAAATCCAAACGGGGTACGAGCTCTGTATGCTGGGAGCTTCTGAAACTGCCTAGAGCAGAATTTTGCCATAATGCTGTTAATGAGTATCTTGCTGCACGTGAAAAGAAAACTAGGGAACTTTTGAAGACAAAAGTTCGTAATCATCTTGCATTTCTGGGatggaaaattgaatttagaaATATGAAAACCGTTTACAAGCAACTGCATTACAAGTACACCTCACCTGATGATGGAAAGTTTTACATGTCTATTTATAAGGTTTGTAAACACTTGAAGAAGGAAGCCAGCATGAACTCTTTGCCATCACAAGACAGTAATGTTTCGCATCTGCACCTCAAACAACCAGAAAATAGTCGGAAACCAGATGTTTTACCCTCGGTTGTGCCACCTCCTTCTGTTAATGATGATGTTAACCCTGGACTACTCACTAGAAATGGCAAGCGAAAACGGAAACGCTTGAGGGtagaggaaaaagaattacCTAGTCGGATGTTCAGATCAACCAAAAGAGTACAGATGGTGGACACTCCTAGCCTGACACACCGAAAGCCTTTAAATGTACTCTCTTGGTTAATAGACAGGAACAAGGTGTTGCCACGAGCAAGGGTCTATTATCATGCAAGACGCAGCCCTCATTCTAAGGGTGAGGGTAGAATCACTCGCGATGGCATCAAGTGTAACTGTTGTATGGATGTATATGGTCTCGGTGGCTTTGAAGGTCATGCTAGTGGAACTATTAGCTGCAGACCTGCTGCTAGCATCTTTTTGGAAGATGAGAAGTCACTTTTTGATGTCCAGATGCAAATAATGTATGATCAtctgaaaagagaaaggacaATAAAGACATCTAGTGATTGGCATCAAGACGAGAATGATGAAGTTTGTTCTGTTTGTCATTATGGTGGTGATCTAATCTTATGTGATCAATGTCCTTCTTCATTCCACAAGGATTGCCTTGGATTAAAGgAAATAACCGATGGCGACTGGTTTTGCCCGTCGTGTCAATGTGGCAGTTGTGgtgaaaccaaaaataaagaggCTGGGGATGGAAATTTTCTTACTTGTGTTCAATGTGAACATAAATATCATCTTCATTGCCTGAGAAATAGAGGTGTGGACCAGTCCAGAAGATATGCGAAAAAGTGGTTTTGTGgcaaaaaatgtgaaaagATATATGCTGGCCTCCAAAAACTGGTGGGGAAACCAGTTTTTGTCCAGGAGAAAAACACTATAAAGTGGACCTTGATGAGATGGGACAACCCTAGTAGTCATCAACTTggtagtaataataattacttcGTTGCTGAGAGTTACTGCAAGATCCATCTTGCTCTCAGCTTAATGCACGAATGCTTTGAGACCCTAAAGGAACCAAAGACAAAAAGAGATGTCATAGAAGATATTCTTTTCAGTAGATGGAACGAGCTTAAGAGATTAAACTTCCTAGGCTTTTACTCTGTACTTCTGGAGAGAGATGATGAATTGATTAGTGTGGCTACTTTAAGgGTTCATGGAGAGAAAGTAGCGGAAATGCCTCTTATTGGTACTAGAGTTCAGTATCGTCGACGTGGAATGTGTCGAATTTTAATGGATGAGCTTGAGAAGATGCTCATACAACTCGGAGTGGAGAGGCTGGTTTTGCCATCGGCACATGTTACCCTTGATACGTGGACGAAgaattttggattttcaaaGATGACATCCGCTGACAGAAAACAGTTTCTGAACTATACCTTCCTAGATTTTCAAGGAGCTATCATGTGCCAGAAACTGTTGATACCCTCTCAAGATTCAGTTACTTCAACTGATGAAGCAAAAGAGATCAGAGTGCATGGGACAGTGGATCCACAACTGTTTGATAATGTTGCAGTTAACAAAGATCGTCTCAGTAAAGATGTTATCGATCCAGTAACATGGGTGAATACCAGAAAGTA 3134 0.4024 MRHSQRQSQKHSPTVDEMQRNFRSRKRKGESGNGKMKLLVNEKVEVRSVENGLLGSWHPATVTQCGNLQRHVRYDNILTDDGLDYLIEVIGVPPVLDDVPSSTCNGRGFIRPLPPLVEFEKQGLRYGLCVDVNYQEAWREGVIFDRDDDMEKRRIFFPDVGDEKKICIDQLRITQDWDEVTENWERRGNWVFLDVLEEYEQAQYVPVSPKQIWYDVRAKKDFDKIWDWTFKVKNLWKDLVLEEIDNYLALTVKEVIPALGISNRFLENAQGPDSVEPTADVHHDASPNNLSGSNIRNTTSPKEKDDTRNAAIPKEKDEFIPFMDIVPREPIRRRYDLYPIDGLPTLHLEIRLNISRPDNEVLQQDEHVPPVEEMLSQNPEKPPCNNSGEASDSRCLQKGRKSKRGTSSVCWELLKLPRAEFCHNAVNEYLAAREKKTRELLKTKVRNHLAFLGWKIEFRNMKTVYKQLHYKYTSPDDGKFYMSIYKVCKHLKKEASMNSLPSQDSNVSHLHLKQPENSRKPDVLPSVVPPPSVNDDVNPGLLTRNGKRKRKRLRVEEKELPSRMFRSTKRVQMVDTPSLTHRKPLNVLSWLIDRNKVLPRARVYYHARRSPHSKGEGRITRDGIKCNCCMDVYGLGGFEGHASGTISCRPAASIFLEDEKSLFDVQMQIMYDHLKRERTIKTSSDWHQDENDEVCSVCHYGGDLILCDQCPSSFHKDCLGLKEITDGDWFCPSCQCGSCGETKNKEAGDGNFLTCVQCEHKYHLHCLRNRGVDQSRRYAKKWFCGKKCEKIYAGLQKLVGKPVFVQEKNTIKWTLMRWDNPSSHQLGSNNNYFVAESYCKIHLALSLMHECFETLKEPKTKRDVIEDILFSRWNELKRLNFLGFYSVLLERDDELISVATLRVHGEKVAEMPLIGTRVQYRRRGMCRILMDELEKMLIQLGVERLVLPSAHVTLDTWTKNFGFSKMTSADRKQFLNYTFLDFQGAIMCQKLLIPSQDSVTSTDEAKEIRVHGTVDPQLFDNVAVNKDRLSKDVIDPVTWVNTRK 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00291 1044 MobiDBLite consensus disorder prediction 374 400 - -
Bva12g00291 1044 Pfam Agenet domain 42 115 IPR008395 -
Bva12g00291 1044 MobiDBLite consensus disorder prediction 514 552 - -
Bva12g00291 1044 Pfam PHD-finger 695 736 IPR019787 -
Bva12g00291 1044 CDD PHD2_CHD_II 694 734 - -
Bva12g00291 1044 Pfam Tify domain binding domain 617 668 IPR032308 -
Bva12g00291 1044 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 847 971 IPR016181 -
Bva12g00291 1044 Pfam Acetyltransferase (GNAT) family 873 963 IPR000182 GO:0016407
Bva12g00291 1044 Gene3D - 833 996 - -
Bva12g00291 1044 MobiDBLite consensus disorder prediction 16 33 - -
Bva12g00291 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 736 IPR013083 -
Bva12g00291 1044 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 558 1000 - -
Bva12g00291 1044 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 23 539 - -
Bva12g00291 1044 SMART agenet_At_2 122 179 IPR014002 -
Bva12g00291 1044 SMART agenet_At_2 36 98 IPR014002 -
Bva12g00291 1044 SMART PHD_3 736 789 IPR001965 -
Bva12g00291 1044 SMART PHD_3 694 735 IPR001965 -
Bva12g00291 1044 MobiDBLite consensus disorder prediction 379 393 - -
Bva12g00291 1044 ProSiteProfiles Zinc finger PHD-type profile. 692 737 IPR019787 -
Bva12g00291 1044 MobiDBLite consensus disorder prediction 299 313 - -
Bva12g00291 1044 MobiDBLite consensus disorder prediction 270 313 - -
Bva12g00291 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 737 791 IPR013083 -
Bva12g00291 1044 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 830 993 IPR000182 GO:0016407
Bva12g00291 1044 MobiDBLite consensus disorder prediction 284 298 - -
Bva12g00291 1044 PANTHER PHD ZINC FINGER PROTEIN 558 1000 - -
Bva12g00291 1044 SUPERFAMILY FYVE/PHD zinc finger 677 735 IPR011011 -
Bva12g00291 1044 MobiDBLite consensus disorder prediction 1 34 - -
Bva12g00291 1044 PANTHER PHD ZINC FINGER PROTEIN 23 539 - -
Bva12g00291 1044 CDD NAT_SF 886 947 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00291 Bva-Chr12 4949571 4956645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00291 562 940 PHD Transcription Factor Family AT5G58610 47.792 2.40e-112 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva12g00291 Acetyltransf_1 9.4e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00291 - - vra:106763506 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00291 12 4949571 4956645 Bva12g00291 12 4949571 4956645 ECH