Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00288 ATGGGCGGGTCTATACTGTTTAACAATATTAGACCCGATTCTCCAAAGCTCTTGCATCTTACACCGGCACAGCCAccgccgccgccgccaccACCAGCAGCCCACTTTTTTCAGTCCCCCGCCGTCCCTAACTCTCTCGGTCGACCGTCACTTACAGAGGGGAAAACAATGAGGAAGTTGAAATTTCATGAGAAAAAGCTATTAAAGAAGGTTAATTTTTTGGAATGGAAGAGAGAAGGAGGTCATAGAGAAAACCAGGTTATGCAGCGCTACCATGTTACTGGACGTGACGATTACAAAAAatattcAAGTTTGTGCCGGATGGTTCAAAAGTTAGTGAACATGCTGAAGCAGATGGACCCAAAAGATCCTTTCCGTATTGAGATGACCGATATGCTCTTGGAAAAGCTATACAACATTGGCGTGATACCAACTAGGCAAAGCATCACACAATGTGAAAATTTAACAGTGTCATCCTTATGTAGGCGCAGGCTCTCAACAGTTTTGGTGCGGTTAAAATTTGCCGAGCACTTGAAAGAAGCTGTCACGTACATCGAGCAAGGGCATATAAGAGTTGGACCTGAGACAGTTACTGACCCTGCTTTCCTTGTAACCAGAAATATGGAAGATTTCATTACGTGGGTGGATTCATCaaagataaagagaaaggTGTTGCAGTACAATGACAAGTTGGACGATTACGATGCAATGAACTG 716 0.412 MGGSILFNNIRPDSPKLLHLTPAQPPPPPPPPAAHFFQSPAVPNSLGRPSLTEGKTMRKLKFHEKKLLKKVNFLEWKREGGHRENQVMQRYHVTGRDDYKKYSSLCRMVQKLVNMLKQMDPKDPFRIEMTDMLLEKLYNIGVIPTRQSITQCENLTVSSLCRRRLSTVLVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDAMN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00288 238 SMART Ribosomal_S4_2 59 162 IPR001912 GO:0019843
Bva12g00288 238 Gene3D - 163 237 IPR036986 GO:0003723
Bva12g00288 238 ProSiteProfiles S4 RNA-binding domain profile. 163 229 - -
Bva12g00288 238 SMART s4_6 163 226 IPR002942 GO:0003723
Bva12g00288 238 PANTHER 30S 40S RIBOSOMAL PROTEIN 57 237 IPR022801 -
Bva12g00288 238 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3 57 237 - -
Bva12g00288 238 CDD S4 163 231 - -
Bva12g00288 238 Pfam S4 domain 163 209 IPR002942 GO:0003723
Bva12g00288 238 SUPERFAMILY Alpha-L RNA-binding motif 82 230 - -
Bva12g00288 238 Pfam Ribosomal protein S4/S9 N-terminal domain 59 162 IPR001912 GO:0019843
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00288 119 204 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 33.333 1.86e-08 51.2