Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00281 ATGACGTCACCACCGGTGTTTTCATCGTCGTCAGCTTCTTCGGCGGCGGTGGCTTCTGCTTTAGTCTCCATCGAACGTTCATTTTCCAAGCTATGGGCCTCGCCGGAGGATCTTCACTCTTTCGAAAACCCACGGCGGTTCTTCGGCTTCGCCAATCGACTTCAGGTCGTCCTAAACCAGCTACTCTTGTCTGAGCAATCGCCGCCGGAGAGCCTCCCGGTGTCCGTGCAAACTGCCCTGAAAGGAATTGCTGGTGATCTCTCAAAAGCAGCTGAAATTGTTTCTATCTATGAAAAGAGCAGCAAGATATATGTCTTGATCAATTGCAAGTCACTGTGTGCATCCCTTCAAGAACACACTGTATCCATTGGAGGGTGGCTCGCCTTGCTCGATTCCGCTCTTCAAGACAACCCCGACCTCCGCAAAAAGGCCTCTGATCTCTGCAGAGACATGAAACTTGCTCAATTCAGGGTCACAGAGAACGAAGAGCGAGTGCAATGTACCCTAGAGAAGGAAGGACAAGGAAGACAAACAAGCAAAGCTGTACAGAGTGCTATAGTAATGGATTTGGCACGTGCTTTGGGGATTGACCCAGATAATCATTCTGAATTATCTAATCAAGTAAAGCTCTTTAAGAACGATCTCCTGCGCTCAAATTCAGTATCAGAGCGGCGGATTCTAGTTtcttttgaaagaattttGGATTATTGGTCAAATGAGCCTAATATAGTGAGTAGGAATTTGGACTtagaaattgaagaagatGCTCCTATTTCTCCATTTAAGAACTTCCTCTGTCCACTGACCAAAGAAGTGATGAAGGATCCTGTGGTGTTGGAAACATCTCAGACCTATGAAAGGACTGCAATTGAATACTGGTTTGAACGATGTATTGAAGATGCCCGTGACATAACTTGTCCTGTTACTGGGAGGGTTCTCAAGTCCTTGGACTTGAAACCGAATATTTGTTTGGCTGGGGCAATTGAAGAGTGGGTTAACAGAATTATTGAGTATCAAGTCAAATCTGCAAAGGAGCATCTGACAGAGGAACCACTTTCTGTTGATCGAGTTGAGCGGGCACTGGATAACATTTATAAGGTCTCAGAAGAGCAACCCACTAGCAGATACATAATAAGGAACGAGGGCATTGTGCTGTTGATTGTCAAGATGCTTAGTAATAGCTCAAAATCTATAGGAAGTCGTTTGAGAAGCAAAGCTCTAATGGCTCTAGTTAGTATGGCCAAGGATGAAGAAAGCAGGAAAGTAATGCTTGAAGGGAGTATTACTAGATTGGCCGTACATAGTCTTATTGGGAGctcagagaaagagagagagtatGCTGTCAAGTTGTTACTAGAGTTTTCCAATGATGAAGCTTGTTGCATAAGGATAGCATCAGAGAAAGGTGCATTAGTTCTTCTCACCAGTATGGCTGGAAATCTGGAGTATCCTGTGTTGTCCAATGTAGCTGAGGAAGTCTTGAGACAAATAGAGAAGGTGGAGGATAATGTTCAACTTTTAGCAGCTGCTGGCAGATTTCAACCTTTACTTTCGCGGTTACGTGATGGATCTGATGGAGTAAAGGTAGAGATGGCTTCTTTGTTGGGAAGGATGACCTTGACAAATAGCAGTAAAGAACAAATTGCTAGGCAAAGTGCTAGACTACTTGTTGAACTGCTGTCAAAGCCTGAAGGAAAGGCACCGAGTTTGCAAGCATTATATAACTTGTCTGGATTGGATGACAACACAACTATCCTTGTTGAATCTGCAGCCCTTCCGTCTCTTATAGAAGTGCTTTTTGTTGACCAGGATCCATTAGATGAGTTAAAAAAGTTAGCTGCTTCAATAATTGCAAACATAGTATCCAAGCAAGGGCACTGGGAACTAGCATCTGCTGACAAGAAGGGGAACACAATGCAGTCGGAGAATATAGTTCTTGGACTTCTGGGGCTTTTAAACTCTTCATCTTCTGAATGTCAAGTATCAGTTCTTCACATTCTTTGTGGAATTATATCTTCACCCCAGGCCTCAGaGTCGGTAGCCTCACATATCAAGTCTGCGGATGGCTTTAAAACGGTCATATCATTTCTTGAACACCCACAAGTTGAACACAGGATCTATGCTTATAAGCTTGCAAGACTGCTATCTGAATGGTTCAATCAAGATTTAGCAAATGAGCTGAGACTTTCCAACAAGCTTAGCATGCTGAAAGAAAAACTGTTAGATCAACAATCTACCGATGAGGTGAGATCAGATGCAGCACGTATGCTGTCCAACCTGGTCCTCTCAGGAGATGAAGACAAGACCCTTTTAGGAAGTGATTTCTTGGGTTGGACCGTAGCCACTATCAAGAACCAACGGCGTAGTTCCAATGCAAGGACTTCACGAACTGCTTCCGGCATGCTGGAGGGTCTTCTTGGTCTCTTGCTTCGCTTCACTAGGAACCTTGACCAGGAAAATCTTAATGTAGTTAGAGAGAACCATCTCATGACTGTTTTCTCTGAGCAGCTAGATTTTACCTCCACACCAAAGGTAAAAGAACTTGCTGCGCATGGATTGCGAAACTTGTCAGAATTTGGAAGGTCAGTTATTACTAGAGAGTCCGAACCTCCGCCGCCCACCGGATTCTGCTCTTCATTAGTGTTCATGTGCGGGAGGCGCTCTACTCAACCTTCCACTTGTCCCATCCACAACAGTTTCTGTGTGGAAGATAGTCAATTGTGTCTGCTCAAGTGCAATTGTATCAAGCCCCTTGTTGATCTTCtcaatgataatgataatgataccAGTGTCCAGGTTGCTGCAGTGGAGACACTTTCTACTTTGGTATTGGATTATGCTTCTAACAGTTTCAAGAGAACAGTTGATGAACTGGATCAACTGGGTGTTGTTGAATCTGTGATCAATCTTTTCACAGAGACAAGATCTGCTGAGCTCCAAGAGAAGACAGTTTGGATGGTGGAGAAGATGTTGAGAGTGGAAAGTCACAACCATAGGCACTCACTGAACCAATCTCTTGTCAGGGGCTTGGTTGAAGCCTTCAAGCATGGGAATACCAATGCTAGGAAGCATGCTCAGGATGCTCTCACCCACCTAAAACAGTTATCTGGGGTTAGTACAATGACATCTAGTCAAACTCGGCCTCGgagata 3152 0.4334 MTSPPVFSSSSASSAAVASALVSIERSFSKLWASPEDLHSFENPRRFFGFANRLQVVLNQLLLSEQSPPESLPVSVQTALKGIAGDLSKAAEIVSIYEKSSKIYVLINCKSLCASLQEHTVSIGGWLALLDSALQDNPDLRKKASDLCRDMKLAQFRVTENEERVQCTLEKEGQGRQTSKAVQSAIVMDLARALGIDPDNHSELSNQVKLFKNDLLRSNSVSERRILVSFERILDYWSNEPNIVSRNLDLEIEEDAPISPFKNFLCPLTKEVMKDPVVLETSQTYERTAIEYWFERCIEDARDITCPVTGRVLKSLDLKPNICLAGAIEEWVNRIIEYQVKSAKEHLTEEPLSVDRVERALDNIYKVSEEQPTSRYIIRNEGIVLLIVKMLSNSSKSIGSRLRSKALMALVSMAKDEESRKVMLEGSITRLAVHSLIGSSEKEREYAVKLLLEFSNDEACCIRIASEKGALVLLTSMAGNLEYPVLSNVAEEVLRQIEKVEDNVQLLAAAGRFQPLLSRLRDGSDGVKVEMASLLGRMTLTNSSKEQIARQSARLLVELLSKPEGKAPSLQALYNLSGLDDNTTILVESAALPSLIEVLFVDQDPLDELKKLAASIIANIVSKQGHWELASADKKGNTMQSENIVLGLLGLLNSSSSECQVSVLHILCGIISSPQASESVASHIKSADGFKTVISFLEHPQVEHRIYAYKLARLLSEWFNQDLANELRLSNKLSMLKEKLLDQQSTDEVRSDAARMLSNLVLSGDEDKTLLGSDFLGWTVATIKNQRRSSNARTSRTASGMLEGLLGLLLRFTRNLDQENLNVVRENHLMTVFSEQLDFTSTPKVKELAAHGLRNLSEFGRSVITRESEPPPPTGFCSSLVFMCGRRSTQPSTCPIHNSFCVEDSQLCLLKCNCIKPLVDLLNDNDNDTSVQVAAVETLSTLVLDYASNSFKRTVDELDQLGVVESVINLFTETRSAELQEKTVWMVEKMLRVESHNHRHSLNQSLVRGLVEAFKHGNTNARKHAQDALTHLKQLSGVSTMTSSQTRPRR 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00281 1050 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1044 - -
Bva12g00281 1050 SMART arm_5 817 858 IPR000225 GO:0005515
Bva12g00281 1050 SMART arm_5 720 762 IPR000225 GO:0005515
Bva12g00281 1050 SMART arm_5 541 578 IPR000225 GO:0005515
Bva12g00281 1050 SMART arm_5 901 944 IPR000225 GO:0005515
Bva12g00281 1050 SMART arm_5 371 415 IPR000225 GO:0005515
Bva12g00281 1050 SMART arm_5 579 622 IPR000225 GO:0005515
Bva12g00281 1050 SMART arm_5 499 540 IPR000225 GO:0005515
Bva12g00281 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 347 IPR013083 -
Bva12g00281 1050 SUPERFAMILY RING/U-box 254 334 - -
Bva12g00281 1050 SMART Ubox_2 263 331 IPR003613 GO:0004842|GO:0016567
Bva12g00281 1050 Gene3D - 348 861 IPR011989 -
Bva12g00281 1050 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 1044 - -
Bva12g00281 1050 Pfam Armadillo/beta-catenin-like repeat 908 942 IPR000225 GO:0005515
Bva12g00281 1050 SUPERFAMILY ARM repeat 354 776 IPR016024 -
Bva12g00281 1050 ProSiteProfiles U-box domain profile. 259 338 IPR003613 GO:0004842|GO:0016567
Bva12g00281 1050 Gene3D - 897 1045 IPR011989 -
Bva12g00281 1050 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 913 942 IPR000225 GO:0005515
Bva12g00281 1050 Coils Coil 490 510 - -
Bva12g00281 1050 CDD RING-Ubox_PUB 264 310 IPR045210 -
Bva12g00281 1050 SUPERFAMILY ARM repeat 688 1033 IPR016024 -
Bva12g00281 1050 Pfam U-box domain 263 333 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00281 Bva-Chr12 4448251 4453767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00281 261 1040 U-box Gene Family AT1G76390 32.099 4.59e-96 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00281 - - ccaj:109816409 1351.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00281 12 4448251 4453767 Bva12g00281 12 4448251 4453767 ECH