Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00278 ATGTGCAGTGGTTCTAAGAGGAAACCTTCTGAAATGGGTTTTGGGATGGAGGGTGAATATGGGAAACAAGAAGGGCagaatcataaaaattttccCCTTTTGCTTGAGTACGCAGCCTCAAATGATTTAAAGGGTTTCAAATATGCTGTGGAACAAGAGGGTCTTGATGTTGACGAGGTGGGTTTATGGTATGGAAGGAGGATTGGTTCAAGGAAATTGGGTCTTGAAAAGAGGACACCTCTCATGATTGCTGCTATGTTCGGAAGCAAGGATGTATTAACTTATATACTTGAAACAGGCCGTGTTGATGTTAATCAAACTCATGGGTCAGATGGGGCTACGGCCCTCCATTGTGCTGTTGCTGGGGGTTCTGCTACTTCTCCTGAGGTTGTCAAGCTCTTGCTCGATGCTTTGGCTGATGTTGGTGCTGTTGATGCAAATGGTAAAAGACCATGTGACTTGATCGTGACTGTTGCTAATGATATCTTCAGTTCAAGGAAGAGGATGCTACAAGCCATACTCAAAGGTACAGATGGTATCGTTGAGGCATGTTTTATATCTGAGGGAGCTGTTGGTCAAATggagcagcagcagcaagatGTGACCACACCCCGTGGTTCAAAAGATGGAACTGAGAAGAAAGATTATCCTGTTGATCTCTCTCTTCCAgacataaaaaatgagatcTATGGTACCGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGCTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCTGGGGAAAATGCAAGGCGGCGTGATCCACGAAAATATCATTATAGTTGTGTCCCTTGCCCTGAATTTAGGAAAGGATCATGTAGCAAAGGGGATGCTTGTGAATATGCACATGGTATTTTTGAATGTTGGCTGCATCCTGCCCAGTATCGGACCCGGCTTTGCAAGGATGAGGGTGCGTGCACCAGAAGAGTTTGTTTCTTTGCTCACAAACTGGAGGAGCTTCGTCCTGTGTATGCTTCTACTGGTTCAGCTATGCCTTCACCAAGATCATTTTCGCCTAGTGCTTCTTCATTGGAGATGGGATCAGTTACACCTCTTACACTGGGTTCTCCATCTGTCTTAATTCCCTCTCCCTCCACACCATCTATGACTCCATCTGGAACATGCTCTCCAGGGGTTGGTGCCATGTGGGCGGCCCAATCTAGTGTTGCAGTCCCTACCCTTCAACTGCCGAGAAGTAGGTTGAAAACTTCGTTGGCTGCTAGAGatcttgattttgatattgaagTGCTTGGACTTGAAAATCATCAACTCAGACAACAACTAATGATGGATGAGATGTCTGAGCTTTCCTCTCCATCTGGCTGGAATTATGCAATGTCAACTCATTTGCCTTTTCCTGTTTCTTCGGGTGATCATACTGGCGAGTTAAATAGGCTTGGAGGAGTGAAACCTACTAACCTCGAAGATTATTTTGGGTCTCTTGATCCATCACTTTTCTCTAAATTACAGGGAGTCTCTCTAGATGCTGCAGGATCCCAGTTACAATCTCCAACTGGAAGCCAAGCACGTCATAATGGAAGTCAGCAGCTGCAGAACTATTCATCTGGCCTCTCCACTTCTAACATGATGGGATCGCCTTCATTTGGGATCGAACGATCTGGCCCAGCAGCCACCATGGCTTTCAATTCAAGAATTGCAGCCTTTTCAAAGCGGAGCCAGAGCTTTATTGAACGCAGTGCAGTTAACCATCACTCGGAGCTTTTTTCTCCTCCTGCTTCTGCAACATTGAAGCCTTCTCCCTTCTCTAATTGGGGCTCCCCGGATGGCAAATTAGATTGGGCTGTCAATGGGGAAGAGCTGAATAAGCTGAGGAAATCTGCTTCTTTTGGGTTTCGAAGCAGTAATACTCCTCTAAAAACTTCTGCAGCAACAATGCCAGCAAATGCTAGCGAACCAGATTTTTCTTGGGTTCACTCACTGGTAAAGGACGCTCCATCAGAAGCTGCAGTGCCATCATG 2024 0.4422 MCSGSKRKPSEMGFGMEGEYGKQEGQNHKNFPLLLEYAASNDLKGFKYAVEQEGLDVDEVGLWYGRRIGSRKLGLEKRTPLMIAAMFGSKDVLTYILETGRVDVNQTHGSDGATALHCAVAGGSATSPEVVKLLLDALADVGAVDANGKRPCDLIVTVANDIFSSRKRMLQAILKGTDGIVEACFISEGAVGQMEQQQQDVTTPRGSKDGTEKKDYPVDLSLPDIKNEIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEGACTRRVCFFAHKLEELRPVYASTGSAMPSPRSFSPSASSLEMGSVTPLTLGSPSVLIPSPSTPSMTPSGTCSPGVGAMWAAQSSVAVPTLQLPRSRLKTSLAARDLDFDIEVLGLENHQLRQQLMMDEMSELSSPSGWNYAMSTHLPFPVSSGDHTGELNRLGGVKPTNLEDYFGSLDPSLFSKLQGVSLDAAGSQLQSPTGSQARHNGSQQLQNYSSGLSTSNMMGSPSFGIERSGPAATMAFNSRIAAFSKRSQSFIERSAVNHHSELFSPPASATLKPSPFSNWGSPDGKLDWAVNGEELNKLRKSASFGFRSSNTPLKTSAATMPANASEPDFSWVHSLVKDAPSEAAVPS 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00278 674 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Bva12g00278 674 MobiDBLite consensus disorder prediction 195 217 - -
Bva12g00278 674 SUPERFAMILY Ankyrin repeat 27 156 IPR036770 -
Bva12g00278 674 Pfam Ankyrin repeats (3 copies) 37 143 IPR002110 GO:0005515
Bva12g00278 674 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Bva12g00278 674 SMART ANK_2a 111 143 IPR002110 GO:0005515
Bva12g00278 674 SMART ANK_2a 76 106 IPR002110 GO:0005515
Bva12g00278 674 SMART ANK_2a 29 59 IPR002110 GO:0005515
Bva12g00278 674 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Bva12g00278 674 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Bva12g00278 674 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
Bva12g00278 674 MobiDBLite consensus disorder prediction 1 23 - -
Bva12g00278 674 MobiDBLite consensus disorder prediction 512 540 - -
Bva12g00278 674 Gene3D - 116 171 IPR036770 -
Bva12g00278 674 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 19 669 - -
Bva12g00278 674 Gene3D - 22 115 IPR036770 -
Bva12g00278 674 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Bva12g00278 674 Gene3D - 274 337 - -
Bva12g00278 674 PANTHER UNKEMPT FAMILY MEMBER 19 669 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00278 Bva-Chr12 4434578 4437796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00278 31 668 C2H2 Transcription Factor Family AT5G12850 40.265 6.61e-142 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva12g00278 Ank_2 5.2e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00278 - - aprc:113846970 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00278 12 4434578 4437796 Bva12g00278 12 4434578 4437796 ECH