Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00254 ATGAAGCAGCTTGTGGTGTTACGTCTTTATGAAAACAAGTTGTCTGGGGATATTCCCTTGGAGCTTGGGGAATGTTCAGGATTAAAAGAACTTTTGTTGGGTGCAAACGTCTTCCAAGGAAGTATTCCTTCATCCTTTGGCTCTTTAAAATCCCTGGAATTCTTAGATCTTTCTAGGAACAACTTATCAGGCACAATCCCTGCTGAACTgagaaaactttcaattttgaaGAGCTTGAACTTGTCTTTCAACCATCTGCATGGTGAGGTTCCAATTGGAGGAGTGTTTAGTAACATTACTGGACTTTCACTCTATGGAAATGATTATCTTTGTGGTGGGACACCTGAACTGAAATTGCCTGCATGCCCTGTCATACACTTGAAGAAACCCAAGAAGCCTCTACATTTGAAAGTTATCCTCATTATTGTAGTTACTGGGGCgtttctttgttctttagtTTTGATCATTATATTGCATATgatcaaaaaaccaaaatggttATCCTCAGCCAATTCTTTTGAAGATAGGCTCTTGATGGTTTCTTATGGTGAGCTTTATGAAGCAACCAGTGGATTTTCTTCAACCAAGTTAATTGGCAGAGGGAGTTTTGGCTCTGTATACAAAGGAACTCTTAGATGTTTCAACAAACCTATTGCTGTGAAGGTGCTAAATCTTCAAACACATGGGGCCTCAAAGAGTTTTGTGGCTGAGTGTAGAGCTTTGGCTACAGTTCGACATAGAAATCTTGTGAAAATCCTTACTTGTTGCTCCAGTATTGACTACAAGGGTGCAGATTTCAAAGCATTGGTCTTTGAATTCATGCCTAATGAAAGTCTGGAAAATTGGTTGCACAAAGATCAGCAGCACTCTGAGTCAGAGAACAAAAATCTGAACCTCATACAAAGGTTAGATGTAGCCATAGATGTTGCTCAAGCATTGGATTATCTTCACAATGATTCTGAGGAAGGCAATGCCAGTAGAGAGCAGGCCACATCCTCTACTGTAAAAGGAACCATTGGATATATTGCCCCagAATATGGAATGTGTGGTGGAATTTCAGCAGAGGGTGATATTTATAGCTATGGAATTCTTTTGTTGGAGATGATCGTAGGAAGGAAACCGACTGATAGCATATTCAGTGAGAATCTGAGCCTTAAGATGATGTGTAAGATGGCATTGCCAGAAGGACTTATTGAGCAAGTTGATCCACATTTGCTTGTCCAATCTGATGATACATATAAGGAAGCTCTAGTGTCGTTAGCTAAGATTGGAGTTGCTTGTTCTTCAGAATTGCCTGGTGAGCTAACGGGCATAAAAGATGTTATAGTGGAGTTGCTTGCAATCAAAAGGAGGTTGTCTTGTCCACAAGGTATCACAATTGTCACCCAAAATTA 1394 0.3867 MKQLVVLRLYENKLSGDIPLELGECSGLKELLLGANVFQGSIPSSFGSLKSLEFLDLSRNNLSGTIPAELRKLSILKSLNLSFNHLHGEVPIGGVFSNITGLSLYGNDYLCGGTPELKLPACPVIHLKKPKKPLHLKVILIIVVTGAFLCSLVLIIILHMIKKPKWLSSANSFEDRLLMVSYGELYEATSGFSSTKLIGRGSFGSVYKGTLRCFNKPIAVKVLNLQTHGASKSFVAECRALATVRHRNLVKILTCCSSIDYKGADFKALVFEFMPNESLENWLHKDQQHSESENKNLNLIQRLDVAIDVAQALDYLHNDSEEGNASREQATSSTVKGTIGYIAPEYGMCGGISAEGDIYSYGILLLEMIVGRKPTDSIFSENLSLKMMCKMALPEGLIEQVDPHLLVQSDDTYKEALVSLAKIGVACSSELPGELTGIKDVIVELLAIKRRLSCPQGITIVTQN 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00254 464 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524
Bva12g00254 464 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 321 - -
Bva12g00254 464 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 2 321 - -
Bva12g00254 464 Gene3D Transferase(Phosphotransferase) domain 1 274 323 - -
Bva12g00254 464 SUPERFAMILY Protein kinase-like (PK-like) 172 394 IPR011009 -
Bva12g00254 464 SUPERFAMILY L domain-like 2 111 - -
Bva12g00254 464 Gene3D Phosphorylase Kinase; domain 1 157 273 - -
Bva12g00254 464 Gene3D Transferase(Phosphotransferase) domain 1 324 455 - -
Bva12g00254 464 ProSiteProfiles Protein kinase domain profile. 192 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00254 464 Pfam Leucine rich repeat 27 86 IPR001611 GO:0005515
Bva12g00254 464 PRINTS Leucine-rich repeat signature 52 65 - -
Bva12g00254 464 PRINTS Leucine-rich repeat signature 73 86 - -
Bva12g00254 464 Pfam Protein tyrosine and serine/threonine kinase 195 318 IPR001245 GO:0004672|GO:0006468
Bva12g00254 464 Gene3D Ribonuclease Inhibitor 1 127 IPR032675 -
Bva12g00254 464 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 328 455 - -
Bva12g00254 464 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 328 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00254 Bva-Chr12 4106130 4107917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00254 3 91 Receptor kinase-like Gene Family AT3G47570 40.449 1.89e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Bva12g00254 PK_Tyr_Ser-Thr 1.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00254 - - ccaj:109813865 495.352