Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00247 ATGTCTTCCCTCAAGCTCTTACTCGTCCTTCTTAGCTTCCTCAATCTTGCCATCATTGAAgcacaagaaaattattttgtttaccaTTACTgctcaaataataaaactttcaCGGCCAACAGCTCTTACCAGTTCAACCTGAAGAGTCTTCTCTCCACTCTATCTTCCGCCACCATCGACTTCTACAACGCCACAGCTGGAAGCAGAACCACAAACGACGACACCGTTTTTGGCTTGTTCATGTGTCGAGGTGACGTGCCCCTTCAGCTCTGCAGACAATGCGTCCAAAACGCATCAGAAAGAATATCATCAGAGTGCCGCTACTCCAAAGAGGCCATAATTTGGTACGAAGAATGTTTGCTTCGCTAttcaaacttttctttcttctccacGGTCAGTGAATATCCTACGCTTGTCCTGATAAACGCCAATGAGACCCGTCAAAAAAGCTTCAATGATTTTTTAGCCAAGATGTTAGCTGAAGTGGCAGCTGAGGCATCCAACTCTTCTAGGTCTCCAGCAAATTTTGCCATCaaaggtaaaaatatttctgcTTCTGAAACTTTATATACTCTGGCACAATGCACACCAGATTTATCCAGCGAAGACTGCGATATGTGTCTTCGTGATGTGATGGGACATATTCCATGGTGTTGTTTGGGGAAGCAAGGGGGAAGAGTTCTATATCCAAGTTGCGAATTGAGGTTTGAACTTTACCAATTTTATCGAAATGTCACTGACAGTGCACCCGCACCTACGCCATCAGCAAATACTTCTTTCCCCATCTTACCCACAGGCGAAAGAAAAGGCAAATCTAGAACGATTATCATGGCTGTCCTCCCAATTTTTGTTTCGATAGTCCTATTGTGCTTTTGCTGCTATATCCTGcagaagagaaggaagaagagttATAAGGCTGTTCTCCTAGAAAATTTTGGAGATGAAAGTGCCACAGTGGAGTCCTTGCAATTCAACTTGGGGATAATTGAAGCAGCAACAAACAAGTTTTCACAAGAGAACATGATAGGCAAAGGTggatttggagaagtttacaAGGGCATTCTTACTGATGGACGGGTTATAGCTGTAAAAAGACTATCAAAAAGTTCTGGGCAAGAATATGCAATGTTTGGACAATTTTCAGAGAAATCGGATGTCTTTAGTTTTGGCGTTATGATTTTGGAGATTAttagtggaaaaaaaaatgctaactCATACGAATCACGTCAGCATGGCCTCTTAAGTTATGCTTGGACACTTTGGAGGGATGATGCACCTTTAGAAATATTAGATCCAAATCTGAAAGAATTTCATTCACCAACTGAAGTCACAAAGTGTATTCAAATTGGTTTATTATGTGTTcaagaaaatccaaatgaGGCCTTCAATGGCACAAGTGGTTACATATCTCAGTA 1415 0.3739 MSSLKLLLVLLSFLNLAIIEAQENYFVYHYCSNNKTFTANSSYQFNLKSLLSTLSSATIDFYNATAGSRTTNDDTVFGLFMCRGDVPLQLCRQCVQNASERISSECRYSKEAIIWYEECLLRYSNFSFFSTVSEYPTLVLINANETRQKSFNDFLAKMLAEVAAEASNSSRSPANFAIKGKNISASETLYTLAQCTPDLSSEDCDMCLRDVMGHIPWCCLGKQGGRVLYPSCELRFELYQFYRNVTDSAPAPTPSANTSFPILPTGERKGKSRTIIMAVLPIFVSIVLLCFCCYILQKRRKKSYKAVLLENFGDESATVESLQFNLGIIEAATNKFSQENMIGKGGFGEVYKGILTDGRVIAVKRLSKSSGQEYAMFGQFSEKSDVFSFGVMILEIISGKKNANSYESRQHGLLSYAWTLWRDDAPLEILDPNLKEFHSPTEVTKCIQIGLLCVQENPNEAFNGTSGYISQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00247 471 ProSiteProfiles Gnk2-homologous domain profile. 25 128 IPR002902 -
Bva12g00247 471 Gene3D - 23 128 IPR038408 -
Bva12g00247 471 Gene3D - 137 241 IPR038408 -
Bva12g00247 471 Pfam Salt stress response/antifungal 31 125 IPR002902 -
Bva12g00247 471 Pfam Salt stress response/antifungal 144 239 IPR002902 -
Bva12g00247 471 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 373 460 - -
Bva12g00247 471 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 16 252 - -
Bva12g00247 471 SUPERFAMILY Protein kinase-like (PK-like) 373 460 IPR011009 -
Bva12g00247 471 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 262 372 - -
Bva12g00247 471 SUPERFAMILY Protein kinase-like (PK-like) 319 370 IPR011009 -
Bva12g00247 471 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Bva12g00247 471 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 373 460 - -
Bva12g00247 471 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 252 - -
Bva12g00247 471 Gene3D Transferase(Phosphotransferase) domain 1 313 372 - -
Bva12g00247 471 Gene3D Transferase(Phosphotransferase) domain 1 373 463 - -
Bva12g00247 471 ProSiteProfiles Gnk2-homologous domain profile. 133 241 IPR002902 -
Bva12g00247 471 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 262 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00247 Bva-Chr12 4008899 4015803 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00247 373 460 Receptor kinase-like Gene Family AT4G05200 49.438 2.03e-22 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Bva12g00247 Stress-antifung 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00247 - - gsj:114397380 338.961