Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00237 ATGGCAAGGTTATCTTTCAAGGATTCTCTAAAAGCTTTGGAAGCTGATATTCAGTTTGCCAATACTCTGGCATTAAGTTATCCAAGGGACAGAGATGGAGCACGCCTTCAGATGAGATTATCGCACAGTCCAGCCGcacccttttttctttttctttttcagtggGCAGATTGTCACCTGGCTGGTGCACTGGGTTTGCTCagaattcttatttatttgACCTATGGGGATGGGAAAACCACCATGTCAATATATGAAAGGAAAGCAACTCTTAGAGAATTTTACTCAGTGATATTTCCTTCATTATTGCAACTGCAAAAAGGCATCACTGATTTGGAGGACAGGAAACAGAGTGAAGTATATGCTGATAAATACCAAAGGAACGCTGAGTTGGGAAAGGGAAAACAATGTGAAAttgacaaagaaagagaagaggaatGTGGGATTTGCATGGAGGTGACTGGAAAAGTTGTGCTGCCTAATTGCTACCATTGTATGTGTTTGAAGTGCTATGCTGATTGGTGTAAGAGGTCTCAGTCATGCCCCTTTTGCCGTGGTAATCTGAAGAGAGTCAACTCAGGTGACCTTTGGATCTACACAGATGCACGCGATGTTCTTGACTTAGAAACGATTTTCAAAGAGAACCGAAAGAGGTTGTTTCTGTACATAGAAAAACTGCCTCTGATTGTTCCAAACCCTgtttatagattatataatCCTTGTAGGAGGTG 731 0.3803 MARLSFKDSLKALEADIQFANTLALSYPRDRDGARLQMRLSHSPAAPFFLFLFQWADCHLAGALGLLRILIYLTYGDGKTTMSIYERKATLREFYSVIFPSLLQLQKGITDLEDRKQSEVYADKYQRNAELGKGKQCEIDKEREEECGICMEVTGKVVLPNCYHCMCLKCYADWCKRSQSCPFCRGNLKRVNSGDLWIYTDARDVLDLETIFKENRKRLFLYIEKLPLIVPNPVYRLYNPCRR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00237 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 240 - -
Bva12g00237 243 PANTHER RING FINGER PROTEIN 41, 151 1 240 - -
Bva12g00237 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 194 IPR013083 -
Bva12g00237 243 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Bva12g00237 243 SMART ring_2 147 184 IPR001841 -
Bva12g00237 243 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Bva12g00237 243 SUPERFAMILY RING/U-box 136 189 - -
Bva12g00237 243 Pfam Ring finger domain 146 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00237 Bva-Chr12 3933180 3937243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00237 91 189 C3H Transcription Factor Family AT5G01960 28.846 1.34e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00237 - - gmx:100808567 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00237 12 3933180 3937243 Bva12g00237 12 3933180 3937243 ECH