Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00231 ATGGCGGTTCTATCTGCTGGAGAAGAAGGGAACTCGACTCCTCAGAAGCGCAAATTAAGATCCTCGTCCAATGTGTCGCTCATGAAGCGGAGTCCAATCTCTTCCCCTCGCAAATTGAAATCGTCTCGCCGATGCATCAGCACCAGCCCTAATGCCGCTGCTACTgAAAATGGGATGGGTACCCATAAAAAACAAACTGAACTGTGTAATTATCCAGCGAAGCCATTATTGGATACTTCTACTCCCAAACCGAAATGGAATCCCAAAGATGGTGAGCAAGTAAGGGTGGTGAAGGAAGCATTGCATGTGTCCTCTGTACCATCTACGATCGTATGCCGTGACGATCAGCATAATGTAGTTTTGGGGTTCTGCAAGTCCTGCATAGAGCAAGAAAAGGCTGGCAGTGTGTACATATGTGGGTGTCCGGGAACCGGAAAATCATTGTCAACGGAGAAAGTGAAAATGCTTTTGCTCAATTGGGCTAGAGAGTCTGGTTTCTTACAGCCTGATGTTCTAACTATAAACTGTACTTCCCTTGCCAATACATCAGACATTTTCAGTAAGATACTGGGGTTGAATCAACCACGGAGAAAAAATGGTTCAACAACTCCCTTACAACAGCTTCAGAACATGTATTCTCAAAAGTCGTCTAGCAAAAACATGTTATTGGTAGTAGCTGATGAACTAGATTATCTAATCACCAAAGATAAGGCTGTGCTTCACGATCTTTTTATGCTCACCACTTTCCCATTTTCTAGATGTATACTAATGGGGATAGCAAATGCAATTGACCTTGCTGATCGCTTCCTTCCAAGactaaaatcattaaattgCAAACCTATGGTTGTAACTTTCCGTGCTTATTCCAAAGATCAGATTCTCAGGATTCTTCAAGAAAGGCTAAGTGAACTTCCTTACACTGTCTTCCAACATCAAGCATTGGAGCTATGTGCTAGAAAAGTCGCTGCTGCTTCTGGAGATATGCGTAAAGTCCTTTGTATTTGCAGGAGTGCGATAGATGTGCTAGAAGCAGAAATTAGAGAATCTACCTGCACTTCAGATGTTGCATCAGAAGAGAAGCTATCTCCCGAGCAAAATATAGCTACCATTGCTGATTACATGAAAAAGCATGAAGCTGATATTGTAAGGATTGACCATATGGCTCGTGCCTTGTCAAAGACATACAGATCTCCAGTAGTGGATACGATACAATCTCTACCACACCATCAACAGATTATTCTTTACTCTTCTATGAAACATTTTCGTGGAGCCAAAAAAGAGACTATTCTAGGGGAGTTATATAAATCCTACATGGACATGTGCAAATCATCACTAATTCCACCAGCTGGgattttggaattttcaaaTATGTGCAGAGTGCTAAATGACCAGGGGCTTGTAAAACTAGGACAATCACGAgaggataaattaaaaaaggtgGCACTGAATGTAGATGAAGCTGATATCACTTTTGCATTGCAGGACATTCGATTTTTTCGAAACTACCTTCAATG 1514 0.4062 MAVLSAGEEGNSTPQKRKLRSSSNVSLMKRSPISSPRKLKSSRRCISTSPNAAATENGMGTHKKQTELCNYPAKPLLDTSTPKPKWNPKDGEQVRVVKEALHVSSVPSTIVCRDDQHNVVLGFCKSCIEQEKAGSVYICGCPGTGKSLSTEKVKMLLLNWARESGFLQPDVLTINCTSLANTSDIFSKILGLNQPRRKNGSTTPLQQLQNMYSQKSSSKNMLLVVADELDYLITKDKAVLHDLFMLTTFPFSRCILMGIANAIDLADRFLPRLKSLNCKPMVVTFRAYSKDQILRILQERLSELPYTVFQHQALELCARKVAAASGDMRKVLCICRSAIDVLEAEIRESTCTSDVASEEKLSPEQNIATIADYMKKHEADIVRIDHMARALSKTYRSPVVDTIQSLPHHQQIILYSSMKHFRGAKKETILGELYKSYMDMCKSSLIPPAGILEFSNMCRVLNDQGLVKLGQSREDKLKKVALNVDEADITFALQDIRFFRNYLQ 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00231 504 Gene3D - 90 277 IPR027417 -
Bva12g00231 504 PIRSF Cdc6 2 504 IPR016314 GO:0006270|GO:0051301
Bva12g00231 504 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 6 503 - -
Bva12g00231 504 SMART Cdc6_C_2 414 493 IPR015163 -
Bva12g00231 504 Pfam CDC6, C terminal winged helix domain 414 492 IPR015163 -
Bva12g00231 504 Gene3D - 278 402 - -
Bva12g00231 504 SUPERFAMILY "Winged helix" DNA-binding domain 399 501 IPR036390 -
Bva12g00231 504 Pfam AAA domain 131 247 IPR003593 -
Bva12g00231 504 Gene3D - 403 496 IPR036388 -
Bva12g00231 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 353 IPR027417 -
Bva12g00231 504 MobiDBLite consensus disorder prediction 38 63 - -
Bva12g00231 504 MobiDBLite consensus disorder prediction 1 63 - -
Bva12g00231 504 MobiDBLite consensus disorder prediction 8 31 - -
Bva12g00231 504 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 6 503 - -
Bva12g00231 504 CDD AAA 128 277 - -
Bva12g00231 504 CDD Cdc6_C 407 489 IPR015163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00231 Bva-Chr12 3885754 3893207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00231 12 503 Core DNA Replication Machinery Family AT2G29680 57.000 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00231 K02213 - gmx:100791200 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00231 12 3885754 3893207 Bva12g00231 12 3885754 3893207 ECH