Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00228 ATGGAAGCAAGAATAGGAGAGTTAAGAGGAGGTGATGCTAGTCAAGTTTATGGCTATGGACACATTTTAAAGTCAAACCCTACCATGCATAGGCCAGCTGGTCCACCATTGACAGCCATAGATAGGTTCTTATGGGGGCAACAAAGCCAATTCTCTCAGCAACAAACACAAAACATTGCTAAGAACAATAGAGCTAGGGTTCCGGCTGCCGGGTTTGGCGGCTTTAGGTGTTCCGGTGGTGCAACCTTGAGGTTTGTGTTTCCAAATTCTACTACTCAAGCAGCAAGTTTCATTGATGATGAGGCTTTGAACTGGACATACTTCCAAACTCCCACTTTGTCAACAAATGTAATGGAAGATTTAGTGAAGAAGGCAAAAGGGGTTggaaggaaaaataagaagGGTTCTTCTATGACTTTAATCAAAGGAAACTGGACTGAGGAAGAAGATAGGAAACTTATAAGACTCGTGAAGCAATATGGTGTAAGAAAATGGGCAGTAATAGCTGAGAATTTGGTGGGAAGAGCTGGCAAACAGTGTAGAGAGAGATGGTATAATCATTTGAGGCCTGATATTAAGAAAGAAACCTGgactgaagaagaagagagaatatTAGTCGAAACTCATGCCAAAGTTGGAAATCGTTGGGCAGAAATTGCAAGACACATTCCTGGAAGAACagaaaatgcaataaaaaatcattggAATGCCACCAGAAGAAGACAGaattccaaaagaaagaacaagaaggCAGAAAACTCAGATAAAAAGCCACAGTCTACAATTCTTCAAGATTATATCAGAAGCAAAATTGCTATTGACAATTCAACAAACCCTAAAAGCACTTCCACTGCTACTTCTAGCTCCACAGTGATCTCTGAGGACCCAGCAAACCAATTGAGCCTTGTGCTCTCTGATCCCTCTGAATCTGTTACTAATGAAAATTCACCACCACTGTTAGCTGAACCATGTGATGATGAGTTTCTCTTCATGCAACAATTTTTCGCAGAGATTCCGAATCAGCAGCATCCTATTGAAACAGTTAAGCAATCCAATGACTCTGCTGAAACCTCATTCTCTTTGGGTTTTTGTGATCCATATGAGAATCAAGTACTCACTGATTGTGGATTTGGCTTTTCCAATCCAAACCCTGAAAAGAATATGAACATCCAAGAGAATCTCTTTGTCGAAGAGATTTCGATTACTCCCACTAAACTCTTTGAATCTGATCAGTATATTTCTCACTTGTTGAATGGAGCTCCCAATTCATCATCACCTTGCTGTGACTATGGATACCAAAAACTGAACATGGATTTGCTGAAGCTGGGGAATCATGCTTATTTTTCAgatggaaagagagagatggaTTTGATAgagtttgtttcttcttctcaatTGTCTCCCAGCAGCAACTTCTG 1418 0.3717 MEARIGELRGGDASQVYGYGHILKSNPTMHRPAGPPLTAIDRFLWGQQSQFSQQQTQNIAKNNRARVPAAGFGGFRCSGGATLRFVFPNSTTQAASFIDDEALNWTYFQTPTLSTNVMEDLVKKAKGVGRKNKKGSSMTLIKGNWTEEEDRKLIRLVKQYGVRKWAVIAENLVGRAGKQCRERWYNHLRPDIKKETWTEEEERILVETHAKVGNRWAEIARHIPGRTENAIKNHWNATRRRQNSKRKNKKAENSDKKPQSTILQDYIRSKIAIDNSTNPKSTSTATSSSTVISEDPANQLSLVLSDPSESVTNENSPPLLAEPCDDEFLFMQQFFAEIPNQQHPIETVKQSNDSAETSFSLGFCDPYENQVLTDCGFGFSNPNPEKNMNIQENLFVEEISITPTKLFESDQYISHLLNGAPNSSSPCCDYGYQKLNMDLLKLGNHAYFSDGKREMDLIEFVSSSQLSPSSNF 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00228 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 192 IPR017930 -
Bva12g00228 472 MobiDBLite consensus disorder prediction 273 294 - -
Bva12g00228 472 ProSiteProfiles Myb-like domain profile. 137 188 IPR001005 -
Bva12g00228 472 Gene3D - 141 193 - -
Bva12g00228 472 CDD SANT 144 188 IPR001005 -
Bva12g00228 472 Gene3D - 195 265 - -
Bva12g00228 472 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 243 IPR017930 -
Bva12g00228 472 PANTHER MYB PROTEIN-RELATED 130 400 - -
Bva12g00228 472 SUPERFAMILY Homeodomain-like 140 235 IPR009057 -
Bva12g00228 472 ProSiteProfiles Myb-like domain profile. 189 239 IPR001005 -
Bva12g00228 472 PANTHER MYB DOMAIN PROTEIN 64-RELATED 130 400 - -
Bva12g00228 472 Pfam Myb-like DNA-binding domain 145 202 - -
Bva12g00228 472 MobiDBLite consensus disorder prediction 225 261 - -
Bva12g00228 472 SMART sant 193 241 IPR001005 -
Bva12g00228 472 SMART sant 141 190 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00228 Bva-Chr12 3845477 3848011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00228 33 464 MYB Transcription Factor Family AT5G58850 38.731 1.74e-79 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva12g00228 Myb_DNA-bind_6 4.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00228 K09422 - qsu:111985900 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00228 12 3845477 3848011 Bva12g00228 12 3845477 3848011 ECH