Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00178 atgaagaaaagtcCAAGCCTCAAACCCAATTTGCCTCAACAGTCAAGCCAAAGAAAACAGAATGCTAATCTCAGATATACTACAGTTGCAGAGAATGATGACGGTGTTAGCAAGAGAAATCCTGCACTGAGATGTATGAAATCTGCTATCAAGAAATGTTCTGgttttttcagaattttcGTTTCcgggaaaagaaaatcagtcCCAGAAGTTGTTGAGAGAACTGACAGAAGGAGTGCATCCAAGGGGAGAGGGGTTTCATCATTTTCAACAGATGTATCATCTGGAAGTACTGTTACTAAGAGTTCATCAAAATCGAGGTTTTCTTCAGCCTATGCATCTTCTAGCACTGCAAGTGGACAGCTTGGAGCAGGAAACTTCtcttttcaagaaatttttaagGCAACAGAGAAATTCTctccaaataataaaattgggGAAGGTGGGTTTGGCACAGTCTATAAAGGAAGACTAAATGATGGATCTCTTGTTGCCATAAAGCGTGCCAGAAAGAATGCAAATCCTAAGGTACCCCTATCTGTTTGGGAGGAGTTTTGGGATGTGCAAAACAGGAACTTGTCTGAGTTCAAGAATGAAGTATCCACCTTGTCAAAAATCGAGCATCTGAATCTTGTGAGACTGTATGGATATTTGGAGCATCAAGACGAAAAGATAATCATTGTTGAATATGTAGCTAATGGGACACTGCGGGAACATATAGACGGTATACGAGGGGATGAACTAGAAATGGGTGAGCGTCTAGACGTAGCAATCGACGTTGCTCATGCAGTTACCTACCTTCATATGTATGCAGGGTCAAAGACAATGGCTAGGCAGTTGGGGTGGCCAAAATTTACCAAAGCTATTCTGTGGAACTTTGAATCTTGCTCCCCATTCCCCCTCCCCCTTGGATTTGTCATTGAATCGGTTGCTTCTCATtcaaATCGTCAGATAATCCATAGAGACATTAAAGCATCGAACGTCTTAATCACGGAGAAACTTAGGGGCAAAGTTGCAGACTTTGGATTCGCACGTTTGGCCGAAGAAGACCATGCTGCTACACATATTTCAACTCAAATTAAAGGAACAGCTGGATATATGGATCCTGAGTACCTCCGAACATATCAACTCACAGAAAAGAGTGATGTATATTCCTTTGGTGTATTGCTTGTAGAGATGATCACAGGGAGACATCCTATAGAACCAAAGAAGGCCCGCAGTGAGAGAGTGACAATCAGATGGGCAATGCATATGCTAAAACAAGGAGATGCAGTGATTGCCATGGATCCGAGGCTGCGAAGAACACCAGCTTCAACCATGGCTGTGGAGAAGGTTCTCAAGCTAGCTCACCTATGTCTAGCACCTCTAAGACAATCTAGGCCAACCATGAAGAGTTGTGCAGAGATTCTATGGAGTATCAGGAAAGATTTTAGAGACAAATTAGCCGCTTCTCATTCTTCTGTCACTTCTCACCAGTCTTCAAATTTTCCTCATAGAGATCCTAGGAAGAGTAGGCATACGTCATTTGGTATTGAGGATGATGATAGCTATAAATTTGCCTCTGCATA 1568 0.4037 MKKSPSLKPNLPQQSSQRKQNANLRYTTVAENDDGVSKRNPALRCMKSAIKKCSGFFRIFVSGKRKSVPEVVERTDRRSASKGRGVSSFSTDVSSGSTVTKSSSKSRFSSAYASSSTASGQLGAGNFSFQEIFKATEKFSPNNKIGEGGFGTVYKGRLNDGSLVAIKRARKNANPKVPLSVWEEFWDVQNRNLSEFKNEVSTLSKIEHLNLVRLYGYLEHQDEKIIIVEYVANGTLREHIDGIRGDELEMGERLDVAIDVAHAVTYLHMYADRQIIHRDIKASNVLITEKLRGKVADFGFARLAEEDHAATHISTQIKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMITGRHPIEPKKARSERVTIRWAMHMLKQGDAVIAMDPRLRRTPASTMAVEKVLKLAHLCLAPLRQSRPTMKSCAEILWSIRKDFRDKLAASHSSVTSHQSSNFPHRDPRKSRHTSFGIEDDDSYKFASA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00178 479 Gene3D Phosphorylase Kinase; domain 1 97 230 - -
Bva12g00178 479 MobiDBLite consensus disorder prediction 7 21 - -
Bva12g00178 479 Gene3D Transferase(Phosphotransferase) domain 1 231 452 - -
Bva12g00178 479 MobiDBLite consensus disorder prediction 441 479 - -
Bva12g00178 479 MobiDBLite consensus disorder prediction 82 103 - -
Bva12g00178 479 SMART serkin_6 139 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00178 479 Pfam Protein kinase domain 142 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00178 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Bva12g00178 479 ProSiteProfiles Protein kinase domain profile. 139 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva12g00178 479 PANTHER RECEPTOR-LIKE PROTEIN 55 30 457 - -
Bva12g00178 479 MobiDBLite consensus disorder prediction 1 21 - -
Bva12g00178 479 SUPERFAMILY Protein kinase-like (PK-like) 119 430 IPR011009 -
Bva12g00178 479 MobiDBLite consensus disorder prediction 68 103 - -
Bva12g00178 479 ProSitePatterns Protein kinases ATP-binding region signature. 145 171 IPR017441 GO:0005524
Bva12g00178 479 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1 30 457 - -
Bva12g00178 479 MobiDBLite consensus disorder prediction 453 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00178 Bva-Chr12 3374670 3378646 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00178 127 430 Receptor kinase-like Gene Family AT1G30570 40.328 6.29e-65 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Bva12g00178 Pkinase 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00178 - - gmx:100811511 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva12g00178 12 3374670 3378646 Bva12g00178 12 3374670 3378646 ECH