Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00172 ATGTCTGAGACTATACCACCTGTTTTTGTGGAGTGGGAGGAGCAAATTATTTGTCACGAGCGGGGGAGTCGCGTGATTCACTTTTACTTGAAGCGGGCAAATGGGGATTCAGTGCTTGCTGTTATAGGGACAGAGAGAAGTGTAAGACATATGATGTATGTTATCTCAGACCAATTGTTGGAGGTGTGTGGATCCACTGAATCCATTGCTGCCTATAAATGGCGTGCAAGAAGAGAGGTGGTGGAATGGCTGTCATGTTTGGTCTCAAGGAGTGGTGAAAAGTATATAGATGCTTCGAATGTACAGATTCATGATTCAACACAAGCTGTAGAATCTCTTGAAATATTAGCACAAGCAGCTGGGGTCAGTGCCAATAAAAAGAATTCGCCTGATAAATTGGTTTcaaggaaattgaaatttcaaagttcaGATATTGAATGGTCAGGGATTGCTTGGATTTGTGCTAAACAGCTTAAGCATTACCCTGGATTTTGCGGGAACGGGACAGCCATATctGTGATCAGTGCTGAGTGTGTAAATGGTCCTGCAACAGTTTTGACTTCTAAGCATTATGAGAGATGCTTGGCTTCCATCCCGCATATCTCTTTATCTGAGAGAAAGGTCAAACAAGATGAAGATAATCCAGGCTTGACTCGAGATTATACTTTAAAGCTCAGCAGTAAGAGGAATAGGAATTCCAAGGGACATCAGGttcttgaaaaggatttttCTGGTCCCCAAAATATTAACCCTAGAAATCAGATGACAAAATCTGGACCAACATACCCAAGGTTGAAGTTAAGATTTTCAAGAAAACCAATTGGCATGAAGGTTATTGGACCTAAACCACAGTGCCATCTGTCTTTTAAGATTGATGAAAAGATAGAGCTTCTCTGCCAAGATAGTGGCATTAGAGGATGTTGGTTTAGGTGTAAAGTCTTGAACACATCCCGCAAGAAGCTGAAAGTCCAATATGATGATTTTCTACATGTAGACGGATTGCGGAAGCTAGAGAGGTCCAATCATCTCATTATGAATTGTGTCCCTGCATCTAGAGTGGCAGCTCCAGATAAACTTGGTATGCGATGCTCAGGCCGCCTGACAGTAAGACCCTGCCCTCCTGATGATGATACTACAGACCGTACTTTTGAGGTTGGAGCACCAGTGGATGCCTGGTGGAGTGATGGTTGGTGGGAAGGTGTTGTAACTTCTGTCAATGACTCTGGAGATGGTACCTTGCAGATTTATTTACCTGGTGAAGAGAAGTTCGTAACGCTcgagaagaagaatattcgGGTTTCCCGAGATTGGGCTGGCAATAGGTGGGTTGATATACCGAGGAAGCCGGATATTTGTAGGCTGACTTTGAGCAAGCTACTCCATGTCATTGATGAGGACAAAAGTGATGACTCTGGTGATGGGAGTGATGGTGGCACCGACGAAGACAGCAAGGAGAAGTTGATAGGGgaggaaaattttgataatgcaTA 1490 0.4161 MSETIPPVFVEWEEQIICHERGSRVIHFYLKRANGDSVLAVIGTERSVRHMMYVISDQLLEVCGSTESIAAYKWRARREVVEWLSCLVSRSGEKYIDASNVQIHDSTQAVESLEILAQAAGVSANKKNSPDKLVSRKLKFQSSDIEWSGIAWICAKQLKHYPGFCGNGTAISVISAECVNGPATVLTSKHYERCLASIPHISLSERKVKQDEDNPGLTRDYTLKLSSKRNRNSKGHQVLEKDFSGPQNINPRNQMTKSGPTYPRLKLRFSRKPIGMKVIGPKPQCHLSFKIDEKIELLCQDSGIRGCWFRCKVLNTSRKKLKVQYDDFLHVDGLRKLERSNHLIMNCVPASRVAAPDKLGMRCSGRLTVRPCPPDDDTTDRTFEVGAPVDAWWSDGWWEGVVTSVNDSGDGTLQIYLPGEEKFVTLEKKNIRVSRDWAGNRWVDIPRKPDICRLTLSKLLHVIDEDKSDDSGDGSDGGTDEDSKEKLIGEENFDNA 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00172 496 MobiDBLite consensus disorder prediction 206 262 - -
Bva12g00172 496 MobiDBLite consensus disorder prediction 243 260 - -
Bva12g00172 496 SMART agenet_At_2 287 353 IPR014002 -
Bva12g00172 496 SMART agenet_At_2 381 439 IPR014002 -
Bva12g00172 496 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 173 - -
Bva12g00172 496 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 171 457 - -
Bva12g00172 496 PANTHER BROMO ADJACENT-LIKE DOMAIN PROTEIN 171 457 - -
Bva12g00172 496 PANTHER BROMO ADJACENT-LIKE DOMAIN PROTEIN 8 173 - -
Bva12g00172 496 MobiDBLite consensus disorder prediction 465 496 - -
Bva12g00172 496 Pfam Agenet domain 293 374 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00172 Bva-Chr12 3283905 3286877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00172 301 437 PHD Transcription Factor Family AT5G58610 24.460 3.48e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00172 - - gmx:100816046 498.049