Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00170 ATGGGTTGTTCTCGTGGGAATTTTCACGCTGATGAAGACCCCAACCAAAGGtcaaggagaaaaaagaatgctGCCAGCGGAGAAAACTTAGAATCTGGTGTTGCAGGTCAAGGATCAAGTGAAGGGAAAAGGGCTTTATACCATTGCAATTACTGTAAAAAAGATATGACAGGAAAAATCCATATCAAGTGTGCCATGTGCCCTGATTTTGACCTATGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCCCACAAAAGCAATCGCCCTTACAGGGTTATGGACAACTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTCTTCTTCTAGAGGGAATTGAAATGTATGGCCTGGGGAGCTGGGCAGAAGTTGCAGAGCATGTTGGTACAAAGAGTAAAGAATCATGCATAGAACACTATCGGAATGTATACTTGAACTCCCCCTTCTTTCCTCTTCCGGAAATGTCTCATGTTGTTGGAAAAAACAGAAAGGAGCTTCTTGCTATGGCTAAAGGGCATGgcgaagaaaagaaagGAATTTCCATGGGGGATCTTAGTTTAAAGGAAGAATCTCCATTTTCTCCATCTAGAGTCAAAGTTGAAGATTCTCATAAAGTGGGTTCCACTAGCCGGTTACTATCTAGCTTAAATCCAGAGGTTGAATCTGGCCCCTCTAGTGCTGCAGCAGCTGCTAACAACACAGCTTCTAATGCAACCCGAGGGAAAGATGGTCCTGGAATAGTTAAAATGGAAGATCCTCAAATAGACAGAAATTTTGGGGCAGCCAAGCCTAATTCCTCAGGAAATGAAGGTCTTTCTTTGCTACTTGCTGAAATGGAATTTAAGGACACGGACAATGAGGAAGAACGAGAACTGAAACTACGTGTGTTGCGTTTCTACTCAAAAAGgcttgatgaaagaaaaagcagaaaGGATTTTATACTCGAAAGAAATTTGTTATACCCACATCTTTTTGAGAAGGATTTAACACCAGAAGAGAAGACATTATGCAGGCAGTATGATATTTTCATGCGCTTCCATTCCAAGGAAGAACATGAAGATTTGCTTTG 1088 0.398 MGCSRGNFHADEDPNQRSRRKKNAASGENLESGVAGQGSSEGKRALYHCNYCKKDMTGKIHIKCAMCPDFDLCIECFSVGAEVTPHKSNRPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGSWAEVAEHVGTKSKESCIEHYRNVYLNSPFFPLPEMSHVVGKNRKELLAMAKGHGEEKKGISMGDLSLKEESPFSPSRVKVEDSHKVGSTSRLLSSLNPEVESGPSSAAAAANNTASNATRGKDGPGIVKMEDPQIDRNFGAAKPNSSGNEGLSLLLAEMEFKDTDNEEERELKLRVLRFYSKRLDERKSRKDFILERNLLYPHLFEKDLTPEEKTLCRQYDIFMRFHSKEEHEDLL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00170 362 MobiDBLite consensus disorder prediction 1 40 - -
Bva12g00170 362 Gene3D - 101 152 - -
Bva12g00170 362 SMART zz_5 43 88 IPR000433 GO:0008270
Bva12g00170 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 154 IPR017930 -
Bva12g00170 362 CDD SANT 107 149 IPR001005 -
Bva12g00170 362 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 362 - -
Bva12g00170 362 Pfam Myb-like DNA-binding domain 106 149 IPR001005 -
Bva12g00170 362 MobiDBLite consensus disorder prediction 213 246 - -
Bva12g00170 362 SUPERFAMILY Homeodomain-like 100 153 IPR009057 -
Bva12g00170 362 Gene3D - 38 91 IPR043145 -
Bva12g00170 362 Pfam Zinc finger, ZZ type 46 87 IPR000433 GO:0008270
Bva12g00170 362 ProSiteProfiles SANT domain profile. 102 154 IPR017884 -
Bva12g00170 362 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 362 IPR034318 GO:0003713|GO:0006357|GO:0035065
Bva12g00170 362 MobiDBLite consensus disorder prediction 10 26 - -
Bva12g00170 362 SMART sant 103 152 IPR001005 -
Bva12g00170 362 SUPERFAMILY RING/U-box 47 109 - -
Bva12g00170 362 ProSitePatterns Zinc finger ZZ-type signature. 49 76 IPR000433 GO:0008270
Bva12g00170 362 ProSiteProfiles Zinc finger ZZ-type profile. 44 100 IPR000433 GO:0008270
Bva12g00170 362 ProSiteProfiles Myb-like domain profile. 107 150 IPR001005 -
Bva12g00170 362 MobiDBLite consensus disorder prediction 192 257 - -
Bva12g00170 362 CDD ZZ_ADA2 47 95 IPR041983 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00170 Bva-Chr12 3277510 3282280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00170 10 362 EF-hand Containing Proteins AT3G07740 44.588 1.85e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva12g00170 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00170 K11314 - gmx:100811887 602.438