Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00148 ATGGCGGATTGGGATAATCGCCTAATGCTTGAATTGTACCTTTATGATTACCTAATGAAAAGAAACCTGCATGAAACGGCTGAGATTTTCAGGAAGGAGTCTAACCTTTCGCTTGATCCCATGACTCGTCCagCAATAGATATACCAGAAGGATTTTTGCTAGAGTGGTGGAGAGCGAACTTCGAGTTTGAGACATTTAGAGCATGGATGCATGAGAATTACACTTTTGAGAAAGTTCCATCTACCAAGGGGAAAGAGATCTTGGAAACAAAACAAGGATCAAATGCTTCTCAAGGAGGATTGTATCCCAACAATGAACAAATAAACAGGCAGCTGCCCAATAATTTAGCTTGCACAATGCACAGAAGGTGGAAATCACTAGAGGCAGTGGCCGTGAATGGAATTGACAATGAGTCCCAAGGATTTGTACCTTCTTCATATCAAAAAGAACTCTTGACATGCAAATCAGGGATATGTACTCCAGCAAATGCTACTGAAACAAAGagtcaaagaaaagaatcttCAGCCCTTGCTTCCTCTAAAGCAGCTATTGCTGCAGACAATGAGGAACCAGATCCAGTGATTGAGAATTTATTGAAATCATTCTGGGTGTTTGAACAAGATGCAGCAGAGCTGTGTGAAATATCAATGATAGGAGAGTGCAGtagaaacatgaaaaatttgaggaaattTGAAGAAGGAAACACTGGTATGCTTAAACATGCTGGTTTCAGTTCACAATCAGTGCATGCTGATGATGATGACAGTTTAAAAAGTGATGCTTCCAGCAGTTTACAGATATCTTCTAAACCTGCAGATTG 821 0.3861 MADWDNRLMLELYLYDYLMKRNLHETAEIFRKESNLSLDPMTRPAIDIPEGFLLEWWRANFEFETFRAWMHENYTFEKVPSTKGKEILETKQGSNASQGGLYPNNEQINRQLPNNLACTMHRRWKSLEAVAVNGIDNESQGFVPSSYQKELLTCKSGICTPANATETKSQRKESSALASSKAAIAADNEEPDPVIENLLKSFWVFEQDAAELCEISMIGECSRNMKNLRKFEEGNTGMLKHAGFSSQSVHADDDDSLKSDASSSLQISSKPAD 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00148 273 ProSiteProfiles LIS1 homology (LisH) motif profile. 6 38 IPR006594 GO:0005515
Bva12g00148 273 Pfam LisH 15 34 IPR006594 GO:0005515
Bva12g00148 273 SMART Lish 6 38 IPR006594 GO:0005515
Bva12g00148 273 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 72 - -
Bva12g00148 273 MobiDBLite consensus disorder prediction 246 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00148 Bva-Chr12 2776652 2791291 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Bva12g00148 LisH 4.5e-06 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00148 - - ccaj:109805542 151.369