LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva12g00096	ATGCAGTCCAAGTCTGAAACTGCTAACCGACTGAGGTCTGATCCACATACCTTTCAAGCGACCAATGTTTATTCTGAACCTTGGTGGCGTGGTATTGGGTATAATCCCATCTCCCAAGTAATGGCTGGTGCAAATGCATCCAATTCATCCTCTATGGAGTGCCCTAATGGTGATTCAGAATCCAATGAAGGCCAATCTTTGTCTAATGGTGAGTTGAAtgaggaagatgatgatgCTACTAAAGAATCACAACCTACCACTCCTAATCAATCAGGAAAATATGGGCAAGAACACCAAGGTATGCAACATGCTTCATCATCTGTACCATCAAGACATGATGATTGCTTTGCACAGGCTCCGCAGCTTGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCGTATTATGGGGGGATGATGGCACCTTACGGACATCAGCAGTTGGGATATCCTCCTTTTATGGGAATGCCTCATACCAGAATGCCTTTGCCACTTGAAATGGCACAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTCAGGAGGCGACAGGCTCGTGCAAAAGCTGAGCTTGAAAAGAAGCTAATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGCCACCAGCATGCTATGAGAAGGGAAAGGGGTTCTGGAGGGCGTTTTGCAAAGAAAAGTAATGATGAGGCCCTAAACAACTCGGGCAAGGATAAAAACGCCGTTTCTGGTCCAGGCCTATCATCGCAATCAATTAGTTCATCTGGTTCTGAACCTTTGCACTCTGACTCTGCCGAAACCTGGAACTCTCCCAATGTACAAGTTGCCAGAGGATCTAACGTGCATGACAGATATGAATCTCACAATTATGCAAATGGTAATGGCTCCTATCATATGCACTCAAGTGAAAGGGTGGAGCAAGGGGACTGCTCTGGTCAGCAAAGAGGAAGTATCTCTTCTGAGCAGGTTTCGCAGAGGCGCCTTGCCATTCAATA	1016	0.4429	MQSKSETANRLRSDPHTFQATNVYSEPWWRGIGYNPISQVMAGANASNSSSMECPNGDSESNEGQSLSNGELNEEDDDATKESQPTTPNQSGKYGQEHQGMQHASSSVPSRHDDCFAQAPQLELVGHSIACATNPYQDPYYGGMMAPYGHQQLGYPPFMGMPHTRMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRERGSGGRFAKKSNDEALNNSGKDKNAVSGPGLSSQSISSSGSEPLHSDSAETWNSPNVQVARGSNVHDRYESHNYANGNGSYHMHSSERVEQGDCSGQQRGSISSEQVSQRRLAIQ	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva12g00096	338	MobiDBLite	consensus disorder prediction	45	69	-	-
	Bva12g00096	338	MobiDBLite	consensus disorder prediction	1	25	-	-
	Bva12g00096	338	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	175	230	IPR001289	GO:0003700\|GO:0006355
	Bva12g00096	338	ProSitePatterns	NF-YA/HAP2 subunit signature.	178	198	IPR018362	GO:0003677\|GO:0016602
	Bva12g00096	338	Gene3D	-	173	235	-	-
	Bva12g00096	338	MobiDBLite	consensus disorder prediction	45	113	-	-
	Bva12g00096	338	PRINTS	CCAAT-binding transcription factor subunit B signature	207	230	IPR001289	GO:0003700\|GO:0006355
	Bva12g00096	338	PRINTS	CCAAT-binding transcription factor subunit B signature	176	198	IPR001289	GO:0003700\|GO:0006355
	Bva12g00096	338	ProSiteProfiles	NF-YA/HAP2 family profile.	173	233	IPR001289	GO:0003700\|GO:0006355
	Bva12g00096	338	MobiDBLite	consensus disorder prediction	216	231	-	-
	Bva12g00096	338	PANTHER	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9	31	329	-	-
	Bva12g00096	338	MobiDBLite	consensus disorder prediction	1	24	-	-
	Bva12g00096	338	MobiDBLite	consensus disorder prediction	83	112	-	-
	Bva12g00096	338	MobiDBLite	consensus disorder prediction	292	338	-	-
	Bva12g00096	338	MobiDBLite	consensus disorder prediction	209	278	-	-
	Bva12g00096	338	MobiDBLite	consensus disorder prediction	235	278	-	-
	Bva12g00096	338	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	31	329	IPR001289	GO:0003700\|GO:0006355
	Bva12g00096	338	SMART	cbf3	172	233	IPR001289	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva12g00096	Bva-Chr12	2271748	2277326	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva12g00096	16	277	CCAAT-HAP2 Transcription Factor Family	AT5G12840	54.135	5.91e-87	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Bva12g00096		CBFB_NFYA	5.2e-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva12g00096	K08064		-	gmx:100808378	510.375