Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00062 ATGGCGTCTTCTTCAAGCAGCGGGTTGACATTCAAGCTGCATCCCTTGGTGATAGTGAACATCTCAGACCATTACACTCGGGTTAAGTCACAGATGAACCCACCAACCATTCCATCACTCGACAGCAACAGCAATAGCAGCAGCACCAATGGTGGTGCAGACGTAATGGCTTCCCAAGCCCCAAGGGTTTATGGGTGCGTGATAGGAGTGCAGAGAGGACGCACTGTCGAGATCTTTAATAGCTTTGAACTCCTTTACGATCCTTCTACCAGTTCCCTCGATCGCTCTTTTCTCGAGAAGAAGCAAGAGCTCTACAAGAAGGTATTCCCCCACTTCTATGTACTTGGATGGTATTCGACCGGGAGTGATGCCGAGGAATCAGATATGCATATCCACAAAGCTTTGATGGATATCAATGAAAGCCCAGTCTATGTTCTTCTCAATCCTTCAATCAATCATGCTCAGAAAGATCTCCCCGTCACTATTTATGAAAGTGAACTGCATGTAATAGATGGGATTCCACAACTTATCTTTGTCTGCTCAAGCTACACAATTGAGACGGTTGAAGCAGAACGTATCTCTGTTGATCATGTTGCTCATCTTAAGCCATCTGATGGTGGTTCAGCTGCTACACAGTTGGCTGCTCACCTTACTGGCACACATAGTGCCATAAAAATGTTGCATAGCAGAATTAAGGTGCTTCATCACTATCTTGTTGCGATGCAGAAAGGTGATGTACCTTGTGAAAATTCTCTATTAAGACAAGTATCAAGTCTCCTAAGAAGATTGCCTGCTATTGAATCTGGAAAGTTCCAAGATGATTTCCTAATGGAATACAATGACACGTTATTGATTACTTACCTTGCCATGCTGACTAACTGCTCAAGTGCTATGAATGAACTGGTCGACAAATTCAATACTGCATACGACAGACATAGCAGAAGGGGTGGACGAACTGCTTTTATGTG 968 0.439 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPPTIPSLDSNSNSSSTNGGADVMASQAPRVYGCVIGVQRGRTVEIFNSFELLYDPSTSSLDRSFLEKKQELYKKVFPHFYVLGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIDGIPQLIFVCSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGTHSAIKMLHSRIKVLHHYLVAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLITYLAMLTNCSSAMNELVDKFNTAYDRHSRRGGRTAFM 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00062 322 ProSiteProfiles MPN domain profile. 11 169 IPR037518 -
Bva12g00062 322 CDD MPN_CSN6 9 318 IPR033859 GO:0000338|GO:0008180
Bva12g00062 322 Pfam Maintenance of mitochondrial structure and function 189 303 IPR024969 -
Bva12g00062 322 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 322 - -
Bva12g00062 322 MobiDBLite consensus disorder prediction 30 53 - -
Bva12g00062 322 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 141 IPR000555 GO:0005515|GO:0008233|GO:0008237
Bva12g00062 322 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 322 - -
Bva12g00062 322 Gene3D Cytidine Deaminase, domain 2 1 203 - -
Bva12g00062 322 SMART pad1_6 10 168 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00062 Bva-Chr12 1686928 1699018 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00062 2 273 Eukaryotic Initiation Factors Gene Family AT2G39990 21.300 2.73e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00062 K12179 - gmx:100786026 572.392