Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00048 ATGCAGGGAACCGCAGCCGATGGAGAGGCGGTGGACTTCGAGCCAGAGGACGATGACTTGATGGACGAAGATGCTGGAGCTGACGCCGATGCCTCCGCTTCTCCCCGAGCCCTTCCAATTCCTAAGCTCAAATCCGCCATCACTGGTGGCGCATCTTCAGCACTCTATGGCCCTAAGAAGACCAAAGGCCGCGGCTTTCGACAGGAAAGTGGTGCCGACCGTAACACCATCCTTTCTGGCTCCGATTTCGACTCTCTTTCGTCCGCCTCCGGGGTTGGTCCTCAACGATCCATTGAAGGATGGATCATTTTGGTCACGGGGGTGCATGAGGAAGCACAAGAGGATGATCTGCAAAACGCATTTGGTGAATATGGGGAGATCAAGAATCTGCATTTAAATCTTGATCGTCGAACTGGTTTTGTAAAGGGTTATGCACTGATTGAATATGAGAATTTTGAGGATGCCCGGAATGCAATAGAGGCAATGAATGGATCTGAACTTCTTACACAAATTATCAATGTTGACTGGGCTTTCAGCAGTGGGCCCATTAACGGGCCAATCAGACGAAAGAATATCAGAGGACCCTGGGAACGACGCTCAAGGAGCCCCCCTCGGAGGAGGCATTA 626 0.5144 MQGTAADGEAVDFEPEDDDLMDEDAGADADASASPRALPIPKLKSAITGGASSALYGPKKTKGRGFRQESGADRNTILSGSDFDSLSSASGVGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYENFEDARNAIEAMNGSELLTQIINVDWAFSSGPINGPIRRKNIRGPWERRSRSPPRRRH 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00048 208 MobiDBLite consensus disorder prediction 10 26 - -
Bva12g00048 208 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Bva12g00048 208 PANTHER RNA-BINDING PROTEIN Y14A-LIKE 2 207 - -
Bva12g00048 208 MobiDBLite consensus disorder prediction 1 79 - -
Bva12g00048 208 Gene3D - 52 184 IPR012677 -
Bva12g00048 208 CDD RRM_RBM8 95 182 IPR033744 GO:0003729
Bva12g00048 208 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 167 IPR000504 GO:0003723
Bva12g00048 208 PANTHER RNA-BINDING PROTEIN 8A 2 207 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Bva12g00048 208 PRINTS RNA binding motif protein 8 family signature 92 106 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Bva12g00048 208 PRINTS RNA binding motif protein 8 family signature 166 178 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Bva12g00048 208 PRINTS RNA binding motif protein 8 family signature 148 164 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Bva12g00048 208 PRINTS RNA binding motif protein 8 family signature 55 67 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Bva12g00048 208 MobiDBLite consensus disorder prediction 189 208 - -
Bva12g00048 208 SMART rrm1_1 102 175 IPR000504 GO:0003723
Bva12g00048 208 SUPERFAMILY RNA-binding domain, RBD 94 205 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00048 Bva-Chr12 1337953 1349789 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00048 103 177 Eukaryotic Initiation Factors Gene Family AT3G11400 30.667 1.02e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00048 K12876 - gmx:100527187 268.085