Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva12g00007 ATGGCGCAGCCCAACGCGGAAACTCAGCAAGTTGATCAGAGTCTCATCTCGTTTTCAACAGGAGCATTTTCAGACCCACCAGCCCCTTTCTCTCCTCCTTCGGAGGAAAGAGAACATAACCAACACAAAGCTTATTTAATGTCGTTTCCACCTGGGTACAGGTTTTGCCCAACTGATGAAGAGTTGATTCGTTGTTACTTGACCAAGAAAATCAAGAATGAAAAGCTACCACCCAGTATTATTgtggaagaaaatatttaccGTTTTCATCCAGAAAATTTGGCAGGGAAAGCTCCAAAGGGTGACAAGACTAATTGGATCATGCATGAGTATAGAATGAACCAGCCTCCTCGAACTAGAGTCAATTCCAATGATATGAGGCTGGATGACTGGGTTTTGTGTAAGattcataagaaaaatgagaatacaAAGGGGAAGAAAGATGTCGAAGCCAAGGATCAAAGGACTGAGGATAGAgctaataatgaaaataatgagacAGTTGCTGAATTTAATCCTAACATTCTAGCTGCATCACAGACGAAGGGAGAAGAAGCAATTAATGGGTATCTTCATCAGTCATCTCAAATGGCTCCACCTCTGATTTTGCCTCCGATTCAAGCTTCAGCTTTAATTTACCGTCCACACCCTCAATTGCCAAGGTATCCTTTGTTCACAAGTGTGGAAGAACAATTCATGCATGAGAATATGTACCATAGCAGGCTATCACAGTTTGATCCTTTGTCCAATAACTACAGCAATGCAAGTTGGCCACAACAGATTGATCCTTTGCCCAACAACCATAACAATTCAAGCAGATCACCACAAATTGATCCTTTACCCAATAACCACAGCAATTCAAGCAGATTACCACAAATTGATCCTTTGCCCAATAACCACAGCAATTCAAGCAGATTACCACAAATTGATCCTTTGCCCAATAACTATAGCTATGTGAATGGGCCACCACGGATTGATCCTTTGCACAGTCATACGTACTACTACAGTGATGAGCATCAATGCAATTATGTTTTGCCTCAGAATTTTGCTAATGATCCTCTAAATAATCCTATATGGGGTATTTATGATGATGCTGATTACCAAAGTGAGGAAGACGATTCAAAGAAATA 1130 0.3903 MAQPNAETQQVDQSLISFSTGAFSDPPAPFSPPSEEREHNQHKAYLMSFPPGYRFCPTDEELIRCYLTKKIKNEKLPPSIIVEENIYRFHPENLAGKAPKGDKTNWIMHEYRMNQPPRTRVNSNDMRLDDWVLCKIHKKNENTKGKKDVEAKDQRTEDRANNENNETVAEFNPNILAASQTKGEEAINGYLHQSSQMAPPLILPPIQASALIYRPHPQLPRYPLFTSVEEQFMHENMYHSRLSQFDPLSNNYSNASWPQQIDPLPNNHNNSSRSPQIDPLPNNHSNSSRLPQIDPLPNNHSNSSRLPQIDPLPNNYSYVNGPPRIDPLHSHTYYYSDEHQCNYVLPQNFANDPLNNPIWGIYDDADYQSEEDDSKK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva12g00007 376 MobiDBLite consensus disorder prediction 1 40 - -
Bva12g00007 376 MobiDBLite consensus disorder prediction 142 169 - -
Bva12g00007 376 MobiDBLite consensus disorder prediction 142 164 - -
Bva12g00007 376 Coils Coil 146 166 - -
Bva12g00007 376 SUPERFAMILY NAC domain 44 139 IPR036093 GO:0003677|GO:0006355
Bva12g00007 376 ProSiteProfiles NAC domain profile. 49 193 IPR003441 GO:0003677|GO:0006355
Bva12g00007 376 Gene3D NAC domain 97 144 IPR036093 GO:0003677|GO:0006355
Bva12g00007 376 Gene3D NAC domain 58 96 IPR036093 GO:0003677|GO:0006355
Bva12g00007 376 PANTHER NAC TRANSCRIPTION FACTOR 56 37 95 - -
Bva12g00007 376 PANTHER NAC TRANSCRIPTION FACTOR 56 96 286 - -
Bva12g00007 376 MobiDBLite consensus disorder prediction 253 315 - -
Bva12g00007 376 MobiDBLite consensus disorder prediction 253 320 - -
Bva12g00007 376 Pfam No apical meristem (NAM) protein 50 98 IPR003441 GO:0003677|GO:0006355
Bva12g00007 376 MobiDBLite consensus disorder prediction 1 21 - -
Bva12g00007 376 PANTHER NAC DOMAIN-CONTAINING PROTEIN 102-LIKE 37 95 - -
Bva12g00007 376 PANTHER NAC DOMAIN-CONTAINING PROTEIN 102-LIKE 96 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva12g00007 Bva-Chr12 277726 279761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva12g00007 46 144 NAC Transcription Factor Family AT1G01720 32.500 3.99e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva12g00007 NAM 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva12g00007 - - peu:105126470 100.138