Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02264 atgtacatgtCTTCGTCTGGTTCATCGTCACTTGTATGTCTGGGGCAAGAAGGCTCAGCCGCACTTGAGCAGCATCAGCATCAGCCTCTCCACTTCATTCTAGAGAGCTGCCCCGAGTGGTGGGTGTACACAATCTTTTGGCAAGCTTCCAGTTCCAGAGATGGTAACGGCCGCCTCTTGTTAGATTGGGGCGATGGGCACTTGCGTGGTAGCAGGGAATTGACGTCCGTGTCCCATAGCAAGAATCAGAAGGAACGCTGCAGTAAGCTGCTAATTCCAAACGACGTGGTGGATGGCCATGTTACTGACTCTGAATGGTTTTACACGTTATCCATGACTCGATCGTTTGGCGCAGGTGATGACACCGTAGTCGGCCGTGCTTTTAGCTCGGGCAAACATGTTTGGTTGGTAGGACTGAATGAATTTCAGTTGGAAGAATGTGACCATAGAGTTAGAGAAGCACGTAGTTATGGCATCCAAACTCTCGTATGCATTCCCACTGCAACTGGAGTGCTTGAACTGGGTTCTTCCGACTTGATCGAGCAGGATTGGGGCCTCGTCCAAATGGCTAAGTCACTTTTTACGACCGCATCCGCAAACCCAGCAGCACAAGTTTCCCTTGTAGGTACTCTGGTGAATAATGTTCCGTTTCTGCAGAAACACAATGAGCAACAAAAGACGGCGATGAGTGCTGGCATACAATTAGAAGAGGAGAAGAGATCTTCTTCCTCCGATGATGAGCTCGGTCAAGCACTGAGAAGGCGCCCGCGAGGTAGATCTGGAAAGGCAGCGTCAGATCAATTAATGCCTCCGAATCACGTGGAAGCAGAGAGGCAGCGACGACAGAGACTTAATCAAAGATTCTATGCTCTCCGTTCTGTTGTCCCCAACGTATCCAGGATGGACAAAGCTTCCCTCCTTTCGGATGCTGTGGACTACATCAATCAACTAAAGGCCAAAATTAATCAGCTCGAGCTCAAGGCCAAGTTTCAGCATCGGCATCGACCCACAGCACATGAACCTTCACCTTCGCCTTCACAATCACTCCTGCTGCATGATCATAATTACGATAATATTTATGCCAGTGCCATGGGAGTTGAGGTCAAGATCGTGGGCATGGATGCCATGATAAGGGTTCAATGCCTCGATGTGAATCACCCGTGTGCAAGGTTGATGGATGTTCTAAGAGATCTCAACTTAAAAATTCAGCATGCCAGCATATCTAACGTCAAAGACATCGTGCACCAAGATATAGTGGTTAGGGTTCCTCAGGACCTCATGACAGAGGAGGTGATGAAAAATGCCATTCTCCAAAGGCTGcccaatta 1328 0.4819 MYMSSSGSSSLVCLGQEGSAALEQHQHQPLHFILESCPEWWVYTIFWQASSSRDGNGRLLLDWGDGHLRGSRELTSVSHSKNQKERCSKLLIPNDVVDGHVTDSEWFYTLSMTRSFGAGDDTVVGRAFSSGKHVWLVGLNEFQLEECDHRVREARSYGIQTLVCIPTATGVLELGSSDLIEQDWGLVQMAKSLFTTASANPAAQVSLVGTLVNNVPFLQKHNEQQKTAMSAGIQLEEEKRSSSSDDELGQALRRRPRGRSGKAASDQLMPPNHVEAERQRRQRLNQRFYALRSVVPNVSRMDKASLLSDAVDYINQLKAKINQLELKAKFQHRHRPTAHEPSPSPSQSLLLHDHNYDNIYASAMGVEVKIVGMDAMIRVQCLDVNHPCARLMDVLRDLNLKIQHASISNVKDIVHQDIVVRVPQDLMTEEVMKNAILQRLPN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02264 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 268 317 IPR011598 GO:0046983
Bva11g02264 442 SMART finulus 274 323 IPR011598 GO:0046983
Bva11g02264 442 CDD ACT 377 433 - -
Bva11g02264 442 Gene3D - 265 333 IPR036638 GO:0046983
Bva11g02264 442 MobiDBLite consensus disorder prediction 226 279 - -
Bva11g02264 442 MobiDBLite consensus disorder prediction 238 254 - -
Bva11g02264 442 Coils Coil 307 334 - -
Bva11g02264 442 PANTHER MYC 18 440 IPR045084 GO:0003700|GO:0006355
Bva11g02264 442 Pfam Helix-loop-helix DNA-binding domain 272 318 IPR011598 GO:0046983
Bva11g02264 442 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 18 440 - -
Bva11g02264 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 336 IPR036638 GO:0046983
Bva11g02264 442 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 28 194 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02264 Bva-Chr11 18217181 18218776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g02264 27 440 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 32.794 1.98e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva11g02264 bHLH-MYC_N 1.4e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02264 - K13422 pvy:116120907 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02264 11 18217181 18218776 Bva11g02264 11 18217181 18218776 ECH