Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02231 ATGAGAGTTGCTGCAATCTCTCCAAAGAAACATGAGCGAATGATAGCGAGAGACTGGATTCTAACCGAAGGGAAAGAATCGAAGAAACTGTGCTCGCCTGAGCGTCTTCGATTTTTCTGGGATTGCGGTCTCTCCCGGTTACAGACTCTGGCTTTAGTTGGATACTTAATGGAAGCTGATTTCGTCACGAATGGAATGGTCACAGAAGATGCTTTGGAAGCCGGTGATACTAACAATAATGATAATTTAGTTATTGACGGGGAAAGATGTGGAATATGCATGGATATCGTTATTGACAGGGGAGTTCTAGATTGCTGTCAGCACTGGTTCTGTTTTGTATGCATTGACAACTGGGCTACCATTACGAATCTCTGCCCACTTTGCCAAAATGAGTTTGAGTTGATCACTTGTGTTCCTGTATATGATACTATTGGAAACAATAAAGTTGAAGATGACTCATTCTCTAGAGATGATGAATGGTCCATTGAAGGGAAGAATAACACTCTATCATTCCCCTCATACTATATCGATGAAAATGCAGTCATATGCTTAGATGGTGACAGGTGCAAAATTCGAAGTGGATCAGCAAATATTGAAGGAGATTCTGGTCTTGATACATCAATTGCTTGTGATTCATGTGATATATGGTATCATGCTTTTTGTGTGGGATTTGACCCTGAAGGTACATCAGACATTACATGGTTATGCCCAAGATGTGTGGCAAATGAGGTTCCTAAAACACATATCGATTCAACGGAGAGTGCAAACATGGAATGTGACCTAGATAATGCTAATAATGAATGTCAGACAGAGGGTTCTTTTTCAGGAAAATTGTGTGTTTCAGTCGCTGATACTGGAGAAACAGCTGTTGTTGTCTCAATGGTCGAAGGAAATCAACTGATTCCAGCATCAAGCGAGAAAAGTTTGTCATTCCTTGAAGTTGACAAGGATCCAACGACTGAATCGTGCATTTCCACGTACAACACAAATAGTCACGAGAGCCCGAGAGagatgaaaattatttcaccAATGATGAAGGAACAGGAACTGGAGTTGTCTTTATCACATGATATACCCTGCAGCCTACCTTCTAACTCCTTGGTGCTTGATGATTTTACGAAAAGTGCAGGTGGGGCAAGGAGTGAACCAAGTAGCTTTGATGGAAACATGTTATATAATGAATCACATGTAGGAACTAGTTCATCAAGAAATGAATCTGATTTCGGTCTTCATCTTGGTTTGTCAGTGGGCTCTTTATCGTCTGTTGATGACATGAACAAGAATGATACAAAAAATCAAGTAACTGACGTCGAGCAGTCAAATCCAGAAGAATCTTTGTTGAAAGGAGATGAAGTTGAACCCAATGCTTGGAAGGAAAATACCAGAGTGGCAGGTGGAAAGAGAAGGCATGTTGGTGACAGtATTGATCAAGTTCATATAGAGGTTGATGATATAGATGCCAAACCTGAACTTTTGGTTGAAGTTTCGCAGAAGAAATTTAGAGCTGAGGGTAGTCAAGTGATTAATCCTAAGGACTCAACTGATGCTTCTATTTCAGTTAAAGTTCAAAAAAGCCCCGGCATTGCAATTGTTTCCAGAGGTGATGATCTTAAAGGTTGTCTTGTAAAGGAGAACGTTTCATCAGATATAATGAGTATAGTTAAAGGGATAAACCGGAGACTTCCTGAGGGACTTTCTGGCACTAATGCTCATGATAAGTTGTCTGAAAATCAAGAAGGTATGGTAGGGTTGAGGGTGAAAAAGATCATGAAAAGAGTTTCTGACAAGGAATCATCCTTGGTTGTTGAAAATCTAAGGAAAGAAATTAGAGAAGCCGTCCGTAACAAATCCTCTGAATGTTTCGAGGAAAACCTTTTCGATCCAAAGCTTCTTGCAGCATTTAGGGCTGCTATAGCAGGGCCCAAAACAGAACCTGTAAATAAGTTATGCCCCTTAACCCTAAAAGCAAAGAAGTCATTCTTGCAGAAAGGAAAAGTACGTGAACatctaacaaagaaaatatttgcgAATTCAAATGGAAGAAGGAAGCGTGCATGGGACAGGGACTGTGAAATTGAGTTTTGGAAACATCGATGCACGAGAACTACAAAGcctgaaaaaattgaaactttgaaaTCGGTTCTCGATCTTCTGAAAAAGAATTCGGATAGCCCAGAATCAAGAGAGGGTTCTGAATCTCAGCCTAACAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCACGGAAAGATGACATCAAGCCCCTGTCAGCACTTGAAAATTCTGCTAATTCAGAGCAGAATAAACAGCATAACCCATCAAGAAAGGGATCAAATCCATCTATAAACAATAATACTGTTAAATCAACAGAACCAAACAATGGTTTATCCAACACAGGAGTTTGTTCATCTGAATACAAAGTAAATAAGCTGAATGTACATGGCACATTTGGTGATAGTTCAGCTTCTGGTAAAGTACATTTAAGCAGCAACTCAGAAGGGACATCAATTTCTAGTGCTGGTGTTTCCAAAGTTGACACAAAGGAACTTGGTACTAAATCTAATGCtataaaaagtgataaaagaaaatgggctTTAGAGGTTCTTGCTAGGAAAACAGCTGCTGCAGGTGGAAAAACAGCAAATGAAAACCAGAAAGATGATGCAGTCCTTAAAGGAAATTATCCTCTACTTGCTCAATTGCCGCCAGATATGAGACTGGTATTGGCACCCAGTAGGCACAACAAAATTCCTGTATCTGTGAGGCAGACACAACTTTACCGTCTGACAGAGCACTTCTTGAGAAACATCAACCTGCCAGTCATTCGTAGATCTGCAGATACAGAATTGGCTGTCGCGGATGCAGTTAATATTGAAAAGGAGGTTGCTGACAGGTCAAAAAGCAAGCTAGTGTATCTGAACCTCTGTTCGCAAGAAATCTTGCATCGCTCAAATAACGGAAAATCCCATGAATCTACCGATACAAATCCATCTGTCTCATCAGAGGTTGTCACTGTTAGATCAGAACAAAATGCCATTGAAAATTCAACTGACCCTGCAGTTGTAGCAGCGCTGAAAAATGCTGGTCTTTTGTCTGATTCACCTCCTAGTAGTCCCCATGAGAATAGGGAAATATGCAATAATGAAGATGATCTGTCAGGGcctgataatatatttgaactGGATTCTCATCCGGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTACATCGGTGCTAGTGTTGTAAAGAACGAAAACCCACAGCAAGATGAAGGTCGgtcaaaaatgaaacttgtttTCTCCACCACGAACTTGAAAAAGTCGGATATTGCTTTGGATTGTATGAAAGATGAGAGTTCTGAAAAGAATGAGGTGTCATGTATTGCTTCCTGCTCACCGAATTCTCATAGCGGCCCAGGCCGTGGGGACTCTATAATTGGAGCAGAGGTTGACAaggcttctcttctttctgaGACCCTTCTTGGTGAGGATGCTGTTGAGCCATCTGATGCAGAATTTGACGAATTATATGGCCCAGACAAGGAGCCACttgcaaaaatatttccaGGTGGGgattcaaaaaaattactagGGGAGGGCCAGAGAGAAGTTTTAAGTCTAACTGAGGACAATGGCAgtcattttaaagaaaaacatgtcTCGGACCAAGAAATGAATGCGTCTGGCAGTTCATTTGGCCATGACATTTTATCCAATACATCTGATATTAGTGAAAATTTCCAAAGGAAGGTAGAGAAGTCTGATGCCACTGCAAAGCAATATGACTCTGTAAATAATGTATCGAGGAAGGTAGAAGCCTACATCAAGGAGCATATCAGGCCCTTGTGCAAGAGTGGTGTGATCACAGTTGAACAATACAGGTGGGCAATTGCTAAAACAACTGATAAGGTTATGAAGTACCATTGCAAAGCCAAGAATGCCAACTTCCTCGTAAAGGAAGGTGAGAAAGTAAAGAAACTTGCTGAGCAGTATGTCGAAGCAACCCAACAGAacagaaaaaattg 4055 0.3894 MRVAAISPKKHERMIARDWILTEGKESKKLCSPERLRFFWDCGLSRLQTLALVGYLMEADFVTNGMVTEDALEAGDTNNNDNLVIDGERCGICMDIVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFELITCVPVYDTIGNNKVEDDSFSRDDEWSIEGKNNTLSFPSYYIDENAVICLDGDRCKIRSGSANIEGDSGLDTSIACDSCDIWYHAFCVGFDPEGTSDITWLCPRCVANEVPKTHIDSTESANMECDLDNANNECQTEGSFSGKLCVSVADTGETAVVVSMVEGNQLIPASSEKSLSFLEVDKDPTTESCISTYNTNSHESPREMKIISPMMKEQELELSLSHDIPCSLPSNSLVLDDFTKSAGGARSEPSSFDGNMLYNESHVGTSSSRNESDFGLHLGLSVGSLSSVDDMNKNDTKNQVTDVEQSNPEESLLKGDEVEPNAWKENTRVAGGKRRHVGDSIDQVHIEVDDIDAKPELLVEVSQKKFRAEGSQVINPKDSTDASISVKVQKSPGIAIVSRGDDLKGCLVKENVSSDIMSIVKGINRRLPEGLSGTNAHDKLSENQEGMVGLRVKKIMKRVSDKESSLVVENLRKEIREAVRNKSSECFEENLFDPKLLAAFRAAIAGPKTEPVNKLCPLTLKAKKSFLQKGKVREHLTKKIFANSNGRRKRAWDRDCEIEFWKHRCTRTTKPEKIETLKSVLDLLKKNSDSPESREGSESQPNNPILSRLYLADTSVFPRKDDIKPLSALENSANSEQNKQHNPSRKGSNPSINNNTVKSTEPNNGLSNTGVCSSEYKVNKLNVHGTFGDSSASGKVHLSSNSEGTSISSAGVSKVDTKELGTKSNAIKSDKRKWALEVLARKTAAAGGKTANENQKDDAVLKGNYPLLAQLPPDMRLVLAPSRHNKIPVSVRQTQLYRLTEHFLRNINLPVIRRSADTELAVADAVNIEKEVADRSKSKLVYLNLCSQEILHRSNNGKSHESTDTNPSVSSEVVTVRSEQNAIENSTDPAVVAALKNAGLLSDSPPSSPHENREICNNEDDLSGPDNIFELDSHPELDIYGDFEYDLEDEDYIGASVVKNENPQQDEGRSKMKLVFSTTNLKKSDIALDCMKDESSEKNEVSCIASCSPNSHSGPGRGDSIIGAEVDKASLLSETLLGEDAVEPSDAEFDELYGPDKEPLAKIFPGGDSKKLLGEGQREVLSLTEDNGSHFKEKHVSDQEMNASGSSFGHDILSNTSDISENFQRKVEKSDATAKQYDSVNNVSRKVEAYIKEHIRPLCKSGVITVEQYRWAIAKTTDKVMKYHCKAKNANFLVKEGEKVKKLAEQYVEATQQNRKN 1351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02231 1351 MobiDBLite consensus disorder prediction 765 804 - -
Bva11g02231 1351 Pfam PHD-finger 205 240 IPR019787 -
Bva11g02231 1351 ProSiteProfiles Zinc finger PHD-type profile. 122 242 IPR019787 -
Bva11g02231 1351 MobiDBLite consensus disorder prediction 421 442 - -
Bva11g02231 1351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 246 IPR013083 -
Bva11g02231 1351 Pfam Zinc finger, C3HC4 type (RING finger) 90 128 IPR018957 GO:0046872
Bva11g02231 1351 ProSiteProfiles Zinc finger RING-type profile. 90 129 IPR001841 -
Bva11g02231 1351 MobiDBLite consensus disorder prediction 421 447 - -
Bva11g02231 1351 MobiDBLite consensus disorder prediction 720 741 - -
Bva11g02231 1351 PANTHER RING FINGER PROTEIN 41, 151 160 1348 - -
Bva11g02231 1351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 168 IPR013083 -
Bva11g02231 1351 MobiDBLite consensus disorder prediction 822 848 - -
Bva11g02231 1351 SMART ring_2 180 239 IPR001841 -
Bva11g02231 1351 SMART ring_2 90 128 IPR001841 -
Bva11g02231 1351 ProSitePatterns Zinc finger RING-type signature. 106 115 IPR017907 -
Bva11g02231 1351 MobiDBLite consensus disorder prediction 1033 1052 - -
Bva11g02231 1351 SUPERFAMILY FYVE/PHD zinc finger 204 245 IPR011011 -
Bva11g02231 1351 SUPERFAMILY RING/U-box 82 135 - -
Bva11g02231 1351 Coils Coil 1327 1347 - -
Bva11g02231 1351 SMART PHD_3 188 240 IPR001965 -
Bva11g02231 1351 MobiDBLite consensus disorder prediction 988 1021 - -
Bva11g02231 1351 PANTHER RING/U-BOX PROTEIN 160 1348 - -
Bva11g02231 1351 MobiDBLite consensus disorder prediction 994 1021 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02231 Bva-Chr11 18050872 18062899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g02231 90 150 C3H Transcription Factor Family AT3G58030 38.095 2.42e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva11g02231 PHD 1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02231 - - gmx:100808102 1609.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02231 11 18050872 18062899 Bva11g02231 11 18050872 18062899 ECH