Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02224 ATGGCCGCCTTATCAATATTGAGCGTTTCATTCGTCTTTCTTATCTGGTTTCCTGACGCAACCGGAAGCACTCGTATTTGCCAAATGGAGTCTTGCCAATGGGCCGGACCTCGTGTTCATTTCCCGTTCCGGTTGAGAGAATCCAATCAAAGCAATCTTTGTGGCTATGATCAAGGTTTCGAGCTGTTGTGCAGCGAAAAGGGACAAACGTTGCTCCCTATATCAAACGCCGGAAACTTCCTTGTCAAAGGAATCTCCCTTGAGGACCAAAAAGTATGGATCAATGATCCAGATCTTTGCCTCCCTCGACGTTTTCTCAACAACTTGGACCTTACAGCTACCCACTTCAGATTTAGCGACGAATATAGTCTTGTAAATTTGAGCTTCTTCAACTGCCCCTCCAGCCTCACGGACACTTACCCTGGGCAGCCCATAAACTGCCTAAGAACTAGCAGGGACGACAACTACTCGGTCATAGCTTTGTTGCCTGATTCTTCCTTCCCAACTTGGATTTCATCGTGCCAGTTTATTTCATCAGCTTTCTTTCCCACTATAGATACGCCACGTTGGATATTCTGGAACAGAATTTACGCCGATGTCGAGTTGCAATGGAGCACACCTGATTGTAAACATTGTCAAGGTGGACTCTGTGGGTTCTCCCGCGATGAGGATTCAGGGGTTGCCTGTTACGGAGATAAAAGGCAAGGTCTTTCAAGGAAATATGTCATAGGTCTATGCCTGGGAATACCTGGACTCATAGTCCTCATCGTGTTAGCATACATGTTTAGACGTAAAGTGAACTGGGGTGGTCTGCAACGACCACAACAACCGAGAACAGAATTATCTGGCACAAATATACCCCAACCGGTCCCTGTGGCAATCGGGCTTGACGTGTTGACGATAGAAAAATATCCGATAACCCAACTTGATGAAAGTGCATCAGGAATACAACTACCCAATCCGACTGACAACATTTGCTCTATATGCTTATGTGAGTACCAGCCCAGGGAAACGTTAAGGACCATACCGCAGTGCAATCATTATTTTCATGTCAGTTGCATAGATGGGTGGCTCAAGATGAATGCCACATGCCCCCTGTGCCGAAAGTTGCCGGCCAGGTCCTCTTCTCTGTCTTTGACGAATTCTTA 1148 0.4652 MAALSILSVSFVFLIWFPDATGSTRICQMESCQWAGPRVHFPFRLRESNQSNLCGYDQGFELLCSEKGQTLLPISNAGNFLVKGISLEDQKVWINDPDLCLPRRFLNNLDLTATHFRFSDEYSLVNLSFFNCPSSLTDTYPGQPINCLRTSRDDNYSVIALLPDSSFPTWISSCQFISSAFFPTIDTPRWIFWNRIYADVELQWSTPDCKHCQGGLCGFSRDEDSGVACYGDKRQGLSRKYVIGLCLGIPGLIVLIVLAYMFRRKVNWGGLQRPQQPRTELSGTNIPQPVPVAIGLDVLTIEKYPITQLDESASGIQLPNPTDNICSICLCEYQPRETLRTIPQCNHYFHVSCIDGWLKMNATCPLCRKLPARSSSLSLTNS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02224 382 SUPERFAMILY RING/U-box 319 370 - -
Bva11g02224 382 Pfam Ring finger domain 325 368 IPR001841 -
Bva11g02224 382 ProSiteProfiles Zinc finger RING-type profile. 326 368 IPR001841 -
Bva11g02224 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 372 IPR013083 -
Bva11g02224 382 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 375 - -
Bva11g02224 382 SMART ring_2 326 367 IPR001841 -
Bva11g02224 382 Pfam Wall-associated receptor kinase galacturonan-binding 27 96 IPR025287 GO:0030247
Bva11g02224 382 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 6 375 - -
Bva11g02224 382 CDD RING-H2_PA-TM-RING 326 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02224 Bva-Chr11 18018105 18019443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g02224 27 372 C3H Transcription Factor Family AT2G25410 32.692 1.38e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02224 - - lja:Lj4g3v3004070.1 351.673