Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02205 ATGGCGGACATAATTGCTGAGGTGCCTGTGCAATCCGATGAAATCCGTACAAAGAGGCCAAGGAGCGGCCGAAGGGCCGCACTGAAGGAGAAAGACCCATCGAAAAATGGGGTGAACATTTTAGCCGGGAAGATCACCGGATCCTCTGCAACCCCCATTCCACCGCCATCTGGTGGCCTGGAAAAGGAGAACCATGAGTGTCTTTCTCAGCACCGTTCCTCACCAAAGAAGGGAAAAGGCGCCTCAAAGAAACAATCCAAGCAATCCTTCGAGAAAGACTTGCTTGAAATGCAGGAAAAACTGAAGCAATTGCGTCTTGATAAGGAGAAGACCGATGAACTCTTGAAGGCCAAAGATGAGATCTTGAAGCAAAAGGAGGAAGAACTTGAAAATCGTGGCCGGGAACAGGAGAAGCTTCAGATTGAGCTGAAAAAATTGCAGAAGTTGAAGGAGTTCAAGCCAACAATGATTTTGCCTATGGTAAGAgacaaagaacaagaaaagaaggacAAGAAGAAGAACGGAGGccctgaaaagaaaaggccTTCTCCACCATACATTTTATGGTGCAAAGATCAATGGGCTGAGATTAAGAAGGCGAACCCTGAGGCAGAATTCAAAGATATTTCAAACATGTTGGGGGCAAAATGGAAGACCGTTAGTGCGGCAGAGAAGAAGCCTTACGAGGAGAAATATCAAATTGAAAAAGCAGCATATTTGCGGGTAATTGCAGAGGAAAAACGTGAGAGTGAGGCAATGAAGCTGTTGGAGGAGGAGCAGAAGCAGAAGACTGCTATGGAATTGCTTGAACAGTATATGCAGTTCAAACAAGAGACAGAAaaagacaagaagaagaagaaGAAAGAGAAGGATCCATCAAAACCAAAGCATCCCCTGTCAGCCTTTTTCTTGTTCACAAACGATAGGCGGGCAGCTCTTTTGGCGGAGAAGAAGAGTGTCTCGGAGATTTCCAAGATCACAGCTGAAGTGTGGAAAAACATCACAGAAGAACAAAGGAGACCCTACGAAGAGATAGCAAAGCAGAACAAGGAAAAATATGTTCAAGAAATGGAAGCCTATAAACAGAAGAAAGACGAGGAAGCGGCCAATCTCaaaaaggaagaggaagagtaCATGAAGCTTCAAAAACAGGAAGCCTTGCAACTGCtaaggaagaaggagaaaactGAAAATCTGATTAAGaaaacaaaaaagaatcaccagaagaagaagcagagcAAGGAAGATAAGAATTCTGATCCAAACAAGCCCAAGAGGCCTCCATCCTCCTTCCTCCTATTTAGcaaagaagcaagaaagagTTTGCAGGAAGAACGACCAGGAATCAATAATTCTACCCTTAATGCACTTATTTCGGTGAAATGGAAGgaATTAACTGAGGAAGAGAAGCAAGTTTGGAATGCCAGAGCTGCCGAAGCAATGGATGCATACAAGAAGGAATTGGAAGAGTACAACAAATCTGTTGCTGCAAGCTTGGATCaaggaaaaggagaata 1517 0.3962 MADIIAEVPVQSDEIRTKRPRSGRRAALKEKDPSKNGVNILAGKITGSSATPIPPPSGGLEKENHECLSQHRSSPKKGKGASKKQSKQSFEKDLLEMQEKLKQLRLDKEKTDELLKAKDEILKQKEEELENRGREQEKLQIELKKLQKLKEFKPTMILPMVRDKEQEKKDKKKNGGPEKKRPSPPYILWCKDQWAEIKKANPEAEFKDISNMLGAKWKTVSAAEKKPYEEKYQIEKAAYLRVIAEEKRESEAMKLLEEEQKQKTAMELLEQYMQFKQETEKDKKKKKKEKDPSKPKHPLSAFFLFTNDRRAALLAEKKSVSEISKITAEVWKNITEEQRRPYEEIAKQNKEKYVQEMEAYKQKKDEEAANLKKEEEEYMKLQKQEALQLLRKKEKTENLIKKTKKNHQKKKQSKEDKNSDPNKPKRPPSSFLLFSKEARKSLQEERPGINNSTLNALISVKWKELTEEEKQVWNARAAEAMDAYKKELEEYNKSVAASLDQGKGE 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02205 505 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 15 500 - -
Bva11g02205 505 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 15 500 IPR044601 GO:0003677
Bva11g02205 505 SUPERFAMILY HMG-box 167 243 IPR036910 -
Bva11g02205 505 MobiDBLite consensus disorder prediction 1 94 - -
Bva11g02205 505 SUPERFAMILY HMG-box 419 494 IPR036910 -
Bva11g02205 505 CDD HMG-box 298 358 - -
Bva11g02205 505 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 179 247 IPR009071 -
Bva11g02205 505 MobiDBLite consensus disorder prediction 156 185 - -
Bva11g02205 505 CDD HMGB-UBF_HMG-box 180 244 - -
Bva11g02205 505 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 295 361 IPR009071 -
Bva11g02205 505 Coils Coil 343 413 - -
Bva11g02205 505 CDD HMGB-UBF_HMG-box 424 489 - -
Bva11g02205 505 Coils Coil 258 289 - -
Bva11g02205 505 MobiDBLite consensus disorder prediction 392 450 - -
Bva11g02205 505 SMART hmgende2 294 362 IPR009071 -
Bva11g02205 505 SMART hmgende2 178 248 IPR009071 -
Bva11g02205 505 SMART hmgende2 423 493 IPR009071 -
Bva11g02205 505 Pfam HMG (high mobility group) box 295 361 IPR009071 -
Bva11g02205 505 Pfam HMG (high mobility group) box 180 243 IPR009071 -
Bva11g02205 505 Pfam HMG (high mobility group) box 424 492 IPR009071 -
Bva11g02205 505 Coils Coil 87 149 - -
Bva11g02205 505 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 424 492 IPR009071 -
Bva11g02205 505 Gene3D High mobility group box domain 278 374 IPR036910 -
Bva11g02205 505 Gene3D High mobility group box domain 162 265 IPR036910 -
Bva11g02205 505 Gene3D High mobility group box domain 405 501 IPR036910 -
Bva11g02205 505 Coils Coil 474 501 - -
Bva11g02205 505 SUPERFAMILY HMG-box 282 368 IPR036910 -
Bva11g02205 505 MobiDBLite consensus disorder prediction 156 179 - -
Bva11g02205 505 MobiDBLite consensus disorder prediction 277 301 - -
Bva11g02205 505 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02205 Bva-Chr11 17928395 17930887 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bva11g02205 HMG_box 1.2e-17 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02205 K09273 - jre:108987126 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02205 11 17928395 17930887 Bva11g02205 11 17928395 17930887 ECH