Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02156 ATGGGTCACCATTCTTGCTGCAACCAGCAGAAGGTTAAGAGAGGGCTTTGGTCCCCTGAAGAAGACGAGAAACTTATCAGATACATTACCACCCATGGCTATGGCTGTTGGAGTGAAGTCCCAGAGAAAGCAGGGCTTCAAAGGTGTGGTAAGAGCTGTCGCCTGAGAtggattaattatttgaggCCTGATATTAGACGAGGCAGGTTTACTCCCGAGGAAGAGAAGTTAATTATAAGCCTTCACGGTGTCGTAGGGAACAGATGGGCTCACATAGCAAGCCACTTGCCTGGTAGAACTGACAACGAGATAAAGAACTACTGGAATTCAtggatcaaaaagaaaataagaaagacttCGATGCCTTCATCCATTACTGCACAAAGTGTTGACCACGCTCAATTGAATTATACTTCTAACCATCAGATAGAGTTTGGCAGTTCAGATAATCTAACAGCAAAGCCACCACAGGTTCAAGAAACCTTATTTTCTTCGACATGCCCTCTATTTATGTTTGACACTAGTTCACTAGATGGGACTACAACAGCAGACAGCAACACTGTTAATGTTAACGTACGATCAGCAGAGCTGTTCCAAGATGCTGTGGGTTTGAGCTCATCATCATCAGAAACATGGAATATGAGCCAGCACCACCAAGTCCAAGCACTTGCTCCTCCAGCACTGACATTTACGGCCGCCGCCATGGACAGTACGAATTATCTGCCACCCTTGATAGAGAGCGTGGAGAACATGGTTCCCATTGAAGTGCAATCTTGTAATATCGACGAGGAAGGAGAGATGGCACTGGAATGTTTGCGGAGGCAGCAGCAGTTGAATGAATGGATGGAAACGCAGCAAGAGTGTCCTAACTTTCTCTTCTGGGAAAACGTTGAAGGACAACTTGGTGGGGAAGAAATAGCACCAAATTCATCCAACGTGGGAACAAACacgctttcttcttttccttcgtCTTTGTG 977 0.4309 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSMPSSITAQSVDHAQLNYTSNHQIEFGSSDNLTAKPPQVQETLFSSTCPLFMFDTSSLDGTTTADSNTVNVNVRSAELFQDAVGLSSSSSETWNMSQHHQVQALAPPALTFTAAAMDSTNYLPPLIESVENMVPIEVQSCNIDEEGEMALECLRRQQQLNEWMETQQECPNFLFWENVEGQLGGEEIAPNSSNVGTNTLSSFPSSL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02156 325 CDD SANT 69 112 IPR001005 -
Bva11g02156 325 PANTHER MYB DOMAIN PROTEIN 55 1 324 - -
Bva11g02156 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva11g02156 325 Gene3D - 68 141 - -
Bva11g02156 325 CDD SANT 17 61 IPR001005 -
Bva11g02156 325 PANTHER MYB TRANSCRIPTION FACTOR 1 324 - -
Bva11g02156 325 MobiDBLite consensus disorder prediction 305 325 - -
Bva11g02156 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bva11g02156 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva11g02156 325 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Bva11g02156 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bva11g02156 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva11g02156 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva11g02156 325 SMART sant 66 114 IPR001005 -
Bva11g02156 325 SMART sant 13 63 IPR001005 -
Bva11g02156 325 Gene3D - 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02156 Bva-Chr11 17687439 17689570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g02156 1 314 MYB Transcription Factor Family AT1G63910 49.589 2.99e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva11g02156 Myb_DNA-binding 5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02156 K09422 K02947 gmx:100803556 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02156 11 17687439 17689570 Bva11g02156 11 17687439 17689570 ECH