Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02144 ATGTGGAAAAGGTCATCCGAATTGCCTCGTTTTTCTGCTTCCAAGATGTCATACACAAGGAGAGAAAGGTCTTCTTCACCCCGTGATTCAATTTCTCCTGTGAGGGGCCGTCGATCAAGGACAAGGTCAAGATCAAGATCGTTATCTAGGTCCAGGAGGAGTCACTCCAGGAGTCAAGATTCTATAAATGCAGCCAATCCTGGAAATAATTTGTATGTAACTGGCTTGTCTACAAGGATCACTGCTAGTGATCTTGAGAATTATCAAGCTAAAGGGGTTATGTTTAGGACCCCCAATTTTTCGTCCCATCAGGTTGTTAAGTGTCACCTGGTTACAGATCCTCGTACCAAAGAATCCCGTGGATTTGGTTTTGTCACAATGGAAACCAATGAGGATGCTGAACGCTGTGTCAAGTATCTGAACCGCTCTGTTTTTGTAGGTCGATTAATAACTGTGGAAAAGGCAAAGAGAAAGCGTGCTAGGACTCCAACTCCAGGAAGGTACTATGGTTTGAGAGATAGACGAGGAAGTGGATGGAGACGGTCTCGTAGTTACTCGCCCAGGCGATATCAGGACAGCGATTATTATTCAAGGGAGCGACGAGGAAGATCTCGTTCTCCTTGCAGTAGAAGGACGGATGATTACTCCGACTCTTACAGGAGGAGGAGGGAACGCTCCTTGTCAGCCAGTGATAGTCGCCATCCAAGATA 710 0.4606 MWKRSSELPRFSASKMSYTRRERSSSPRDSISPVRGRRSRTRSRSRSLSRSRRSHSRSQDSINAANPGNNLYVTGLSTRITASDLEKYFGKEGKVVKCHLVTDPRTKESRGFGFVTMETNEDAERCVKYLNRSVFVGRLITVEKAKRKRARTPTPGRYYGLRDRRGSGWRRSRSYSPRRYQDSDYYSRERRGRSRSPCSRRTDDYSDSYRRRRERSLSASDSRHPR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02144 226 Gene3D - 10 153 IPR012677 -
Bva11g02144 226 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Bva11g02144 226 MobiDBLite consensus disorder prediction 21 36 - -
Bva11g02144 226 MobiDBLite consensus disorder prediction 37 52 - -
Bva11g02144 226 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 16 216 - -
Bva11g02144 226 SMART rrm2_1 70 143 IPR003954 GO:0003676
Bva11g02144 226 CDD RRM_RBMX_like 68 147 - -
Bva11g02144 226 MobiDBLite consensus disorder prediction 163 226 - -
Bva11g02144 226 PANTHER OS08G0385900 PROTEIN 16 216 - -
Bva11g02144 226 MobiDBLite consensus disorder prediction 146 226 - -
Bva11g02144 226 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Bva11g02144 226 SUPERFAMILY RNA-binding domain, RBD 66 174 IPR035979 GO:0003676
Bva11g02144 226 MobiDBLite consensus disorder prediction 1 71 - -
Bva11g02144 226 SMART rrm1_1 70 143 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02144 Bva-Chr11 17638762 17643130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g02144 69 153 Eukaryotic Initiation Factors Gene Family AT5G06000 36.471 6.33e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02144 K12897 - qsu:111986068 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02144 11 17638762 17643130 Bva11g02144 11 17638762 17643130 ECH