Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02117 ATGGGGAGAGGTAGACCTAGGGCTGTGGAAAAAGGTGTAGTAGGGCAAAGCCTGAATGTTTCATTATTTGAGTCACTTAATATACCATCAGGTCCTGTATATTACCCCAGCGAGGATGAATTCAAGGACCCCTTGGAATACATATGTAAGATTAGACCTGAGGCTGAGCCATATGGGATTTGTAGGATTGTACCACCAAAGAATTGGAAACCCCCATTTGCTTTGGATCTTGATTCTTTCACTTTCCCCACTAAAACACAAGCCATTCACAAGTTGCAGGCACGTCCTGCTGCATGTGACCCCAAGACTTTTCAGTTGGAGTACTCTAGGTTTTTAGAGGATCACTGTGGCAAAAAGTCAAAGAGGGTTGTATTTGAGGGGGAAGAGTTGGACTTGTGCAAATTATTTAATGCGGTTAAGCGGTTTGGTGGATATAATAAGGttgtgaaggaaaaaaaatgggggGATGTTTATAGGTTTGTGAGGTCAGCGAAGAAGATTTCAGACTGTTCAAAGCATGTCTTATGTCAATTATACAGTGAGCATTTGTATGATTATGAGAGTTACTATTATCAGTTAAATCAGGAGACAGCTCGGAGAGTGAAGAGAGGTTACCATGAGGATGAACAATGTGATTACGGGGTCCAACCTTCAGGATCCAAGAGGATGCAAAGAAGTAACAATTGTTTGAAAGCCAAGGATTCTGAAGGACAGGAGGAAAAGCATGATCAGATTTGTGAGCAATGTAGAAGTGGATTGCATGGGGAAGTGATGCTTTTGTGTGATAGATGTGATAAGGGCTGGCATATGTATTGCCTTTCCCCACCATTGAAGCAAATTCCTCCAGGAAATTGGTATTGCTTCAATTGCTTGAACTCTGACAGGGACAGCTTTGGTTTTGTGCCTGGTAAACATTACTCATTAGAAGCGTTTAGGCATATGGCTGACCGGTCAAGGAGGAGATGGTTTGGACCTGGGTCTGTTTCGAGAACGCAAATAGAGAAGTTGTTTTGGGAAATTGTAGAGGGTTCAGTTGGTGAGGTTGAGGTTATGTATGGAAGTGACTTGGATACATCAGTCTACGGGAGTGGTTTTCCACGTGCTACTGATAAGAAACCAGAAGCAATTGATGCAAAATTATGGGATGAATACTCGGCTAACCCATGGAACCTTAATAACTTGCCTAAGTTGAAAGGTTCAATGCTTCAAGCTGTTCATCATAACATAGCTGGCGTGATGGTACCTTGGCTGTATATTGGGatgcttttttcttcattttgctgGCATTTTGAGGATCATTGCTTTTACTCAATGAATTATCTGCACTGGGGAGAGCCAAAGTGTTGGTATAGTGTTCCTGGTAATGAAGCAAGTGCTTTTGAGAAGGTGATGAGGAGCAGTCTTCCTGATCTCTTCGATGCACAACCAGATCTGCTTTTTCAGCTTGTAACTATGTTAAACCCATCTGTCCTGCAAGAAAATGGAGTACCAGTCTACAGTGTACTTCAGGAGCCtggaaattttgttattaccTTCCCCAGATCTTATCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTTAATTTTGCTCCTGCTGACTGGCTACCATATGGAGCTTTTGGAGCTGATCTGTATCAGCGCTTTCATAAAACTGCTGTATTGTCTCATGACGAGCTTCTTTGTGTAGTTGCACAGTATAGTGACATCAATGACAGAGTGTCTCCTTATTTGAAGAAAGAGTTGCTCAGAATATctgacaaagaaaaatattggagAGAGAAACTCTGGCAAAATGGGATTATCAAATTCTCTCGTATGGCTTCTCGGAAGTGTCCTCAATATGTCGGGACTGAAGAGGATCCGACATGCATTATTTGCCAGCAATATCTATATCTTTCTGCTGTTGTGTGCGGTTGCAGGCCAACTGATTTTGTATGCTTGGAGCATTGGAAACACCTTTGTGAATGCAAAACTGTAAAACTTCGTCTCCTCTACCGTCATTCACTGGCAGAATTGTATGACTTGGCGCTTTCTAtggataaatatatttctgaGGAGAAAGCACTGTGTCAGAAAGTAAGAAGGCAATCCTCATGTCTGGGTGCTTTGACAAAAAAGGTAAAGGGTGGCAATGCTACTTTTACACAGCTTGCAACAAAATGGCTTCTGCAATCTAGTAAGATTCTTCAGAATCCCTTTTCAAGTGATGCTTTTGTTTCTGCACTTAGGGGAGCAGAACAATTTCTTTGGGCTGGTCCTGAGATGGATTCTGTGAGAGATATAGTAAAGAGTTTAATTGAAGCTCAAACGTGGGCTGAAGGGGTAAGAGATTGTGTGAGAAAGATTAATTTCTGGTTGTCTCACCCAGACTCCGATGCAGAGAAAGTTCACTTAGAATATGTTGATGAATTACTGAGTTTGAATCCTGCACCATGTGATGAGCCTGGTCATCAGAAGTTGAAGGAATATGCAGAAGAGGCAAGGTTGTTAGTTCAGAATATTGATACTGTCTTGTCAATGAGTTCAACGATATCTGAGTTGGAAGTTTTATACTCCAGAGCTTGTGGTTTACCGATCTACGTGAAAGAGagtgaaaaattagaaaggaaaatttcttTAGCTAAGGTATGGCTGGATAATGTTAGAAGGTGCATCTCAGTGAAACATCCTGATGCCATAGAGATAGATGTTCTGTGCAAATTGAAGTCAGAGATTGTAGAGCTTCAAGTTCAACTTCCAGAGATAGATGTGCTTCAAAATCTATTAAACCAAGCTCAATATTGTTGTGCCCGTTGTGGTGAGATATTAGAAGGTCCTCTGAAACTAAAGAATGTTGGTGTTGTGCTTAAGGAATGGGACAGTTTCACAGTTGATATACCAGAATTGAGGCTTCTGAGGCAATACTATGCGGATGCCATTTCTTGGGTTTCCCACTTTAATGGTGTTTTAGGGACAGTGCATGAGCGGGAGAATCTAGATAATGCAGTTGACATATTGAAACAGATACTAGAAGATGGcttatctttgaaatttcaagttgatgAGTTGCCTCTAGTTGAGGTTGAGCTGAAGAAAGCTTATTGCAGGGAGAAGGCTCTGAAGGCACATGATTCTAGGATGTCTCTGGAATTCATTCAGGAACTGTTGGAGGAGGCCAGAGCGCTACAAATTGAGGGAGAGAAATTATTCGTGAATTTATCTGGAGTACTTTCTGTTGCCATGTCTTGGGAGCAAAGGGCTCAGGAGATTCTTTCGCATGAGGCTTCTCTTTCTGACTTTGAGGACTTGTTAAGGGCTTCAGAAAACTTATTTGTGATTCTTCCTTCTCTTAATGATATCAAGGATGCAGTCTTGGAAGCTAATTCCTGGTTAAAGAATTCAAAACCCTATTTAGCTTCTACTGCTTCTGCTTCGATTTCCTTGCGGAAATTTGAGGACCTGCAGATATTGGTTTCTCAATCAGAGCTTCTGAAAATATCTATGGAAGAAAGCAGCATGCTGGCAGTAGTTCTGAAGAACTGCAAAGAATGGCAGCATGAAGCTTGTTCTGTACTGAGGGATGCTCGGTTCCTTTTTGAGTTGGATAACATTCCCAAGGGAATATGCAGTAGCCTaatctccaaagttgacgattTGATTGCAAGAACTCTATCTGTCAAAAGATCTGGTTTATCACTCTATTTTGACTTCTGTGAGATTCCAGAGCTTCAAGTAACTTGTTCTACTCTGCAGTGGTGCAAAAAGGCCCTTTCTTTCTGCAATATTTCTCCTTCTTTAGAGGATGTTTTGGAGGTTGCAGAAGAAATTCCTCATTCTTGTGTTTCTGGTACCATGTTGAATATGCTGGTTGATGGGGTTGAATGGCTTAGGCGAGCCTTGGAGGTAATTTCTGGACCACAAAATTCCAGAAGATGCAAGTTGAGTGACGTTGAAGATATACTTACTGGTTATAAGACTGTTACTATGCCATTTGCAGTGGTGATCCGTCAACTTGAAGAAGCCATTGGAAAACATAAGTTGTGGCAAGAACAGGTGCAACAATTTCTTCATCTGAATTACAGGGAACGATCTTGGCCATTGATATTGCAGCTCAAGGAACTTGCGGAGACCGTTGCCTTTAGTTGCTCAGAACTGAATTTGATTGTATCTGAAGTTGAAAAGGTGGAGACTTGGAAGAAGCGCTGCATGGATAGTGTAGGGGCTCTGGTCCAAGATAAGAATTCACTGCTTGATGCTCTGCAGAAGatAAAACAGACTCTAGATAGGTCATTGTTCATGTATGGCAAGTTGCAAGACTGGAAAGATAGAAACTTATGCATCTGCTGCTTTACTGATTTTGAAGATCAGGAGTTTCTTACTTGTTTGACTTGTAAGGACTGCTATCATTTGCGGTGCACCGGGGCAAGTACAATAGTTAGAGATCAAGAAGACTACAAGTGCCACTattgtcaaattttgaatGGTGAATTAAATTACCAGAATGGAGGCGGCCCCTTGAGGTTTCGGGGGAATTGTGCTGACCTGACAACTATCAATGAACTTCTATCTGATGCTGAAAGCTTTTGTGTATGgATTGCTGAAAAAGATGTTCTAAGCCTAGTTGTTGAGCGAGCCCATGAATGCAAATCTTGCTTGAGAGAAATACTGGATCTTGCATCAGCTAATGTAGACAAAGATTTTAGTACCATCTCTGAAAAATTGACCATTGCTATAAAGGCCATTGGAGTGGCTGGTGTCTTTGATCAGCATGATAATTGTGACCTTGAGCTGGCTTTAGGGAGACATTTGTGGAAAGTTCGAGTTAATGAACTGCTAAATGATCTACAAAAGCCCTCTATCCAGCAGATTCAGAAGCATCTGAAAGAGGGACTGGCTATGGAAATACCACCTGAAGATCACTATATGATGAAACTTGCAGAAGTCAAGTGCATTGTTTTGCAGTGGGCAGAACTAGCAAAGAAgGTTGCAATGGATTCTGGGGCACTGAATTTAGATAAAGTTTTTGAACTTATTGTAGAAGGTGAAAACTTGCCCGTTGATGTACAAGATGAACTCATGATATTAAAAACTCGAAGTATGCTTTATTGCATCTGCCGAAAGCCCTTTGATCCAGGAAGGATGATTACCTGCGATCAATGTGAGGAGTGGTATCACTTTGATTGCATGAAATTACCATACACACTAAAGACATACATCTGTCCTGCATGTAACCCATGTACGGAAGTATTGTCTACAACATCTCTTGACCATGGGAGGTTAACTAGTGCTAAATTTGAGGAGCCTAAAACTCCATCTCCAAGGCACACAGAtccaagaaagaaacaaaagagagattcGCAGAGTCTCATTCAGAATCTGTTTGTGCCACCCAAGAACCAAAATGGTAATTTTAGGTATTCCAGCGGGATTGAATGTCTTTGCTGGCGAAACCGGAAGCCCTTCAGGAGAGCAGCTAAGAAACGTGTTGATCTTGGAAGTCTCTctccatttatatatatacaacgaTA 5516 0.3994 MGRGRPRAVEKGVVGQSLNVSLFESLNIPSGPVYYPSEDEFKDPLEYICKIRPEAEPYGICRIVPPKNWKPPFALDLDSFTFPTKTQAIHKLQARPAACDPKTFQLEYSRFLEDHCGKKSKRVVFEGEELDLCKLFNAVKRFGGYNKVVKEKKWGDVYRFVRSAKKISDCSKHVLCQLYSEHLYDYESYYYQLNQETARRVKRGYHEDEQCDYGVQPSGSKRMQRSNNCLKAKDSEGQEEKHDQICEQCRSGLHGEVMLLCDRCDKGWHMYCLSPPLKQIPPGNWYCFNCLNSDRDSFGFVPGKHYSLEAFRHMADRSRRRWFGPGSVSRTQIEKLFWEIVEGSVGEVEVMYGSDLDTSVYGSGFPRATDKKPEAIDAKLWDEYSANPWNLNNLPKLKGSMLQAVHHNIAGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGNEASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRFHKTAVLSHDELLCVVAQYSDINDRVSPYLKKELLRISDKEKYWREKLWQNGIIKFSRMASRKCPQYVGTEEDPTCIICQQYLYLSAVVCGCRPTDFVCLEHWKHLCECKTVKLRLLYRHSLAELYDLALSMDKYISEEKALCQKVRRQSSCLGALTKKVKGGNATFTQLATKWLLQSSKILQNPFSSDAFVSALRGAEQFLWAGPEMDSVRDIVKSLIEAQTWAEGVRDCVRKINFWLSHPDSDAEKVHLEYVDELLSLNPAPCDEPGHQKLKEYAEEARLLVQNIDTVLSMSSTISELEVLYSRACGLPIYVKESEKLERKISLAKVWLDNVRRCISVKHPDAIEIDVLCKLKSEIVELQVQLPEIDVLQNLLNQAQYCCARCGEILEGPLKLKNVGVVLKEWDSFTVDIPELRLLRQYYADAISWVSHFNGVLGTVHERENLDNAVDILKQILEDGLSLKFQVDELPLVEVELKKAYCREKALKAHDSRMSLEFIQELLEEARALQIEGEKLFVNLSGVLSVAMSWEQRAQEILSHEASLSDFEDLLRASENLFVILPSLNDIKDAVLEANSWLKNSKPYLASTASASISLRKFEDLQILVSQSELLKISMEESSMLAVVLKNCKEWQHEACSVLRDARFLFELDNIPKGICSSLISKVDDLIARTLSVKRSGLSLYFDFCEIPELQVTCSTLQWCKKALSFCNISPSLEDVLEVAEEIPHSCVSGTMLNMLVDGVEWLRRALEVISGPQNSRRCKLSDVEDILTGYKTVTMPFAVVIRQLEEAIGKHKLWQEQVQQFLHLNYRERSWPLILQLKELAETVAFSCSELNLIVSEVEKVETWKKRCMDSVGALVQDKNSLLDALQKIKQTLDRSLFMYGKLQDWKDRNLCICCFTDFEDQEFLTCLTCKDCYHLRCTGASTIVRDQEDYKCHYCQILNGELNYQNGGGPLRFRGNCADLTTINELLSDAESFCVWIAEKDVLSLVVERAHECKSCLREILDLASANVDKDFSTISEKLTIAIKAIGVAGVFDQHDNCDLELALGRHLWKVRVNELLNDLQKPSIQQIQKHLKEGLAMEIPPEDHYMMKLAEVKCIVLQWAELAKKVAMDSGALNLDKVFELIVEGENLPVDVQDELMILKTRSMLYCICRKPFDPGRMITCDQCEEWYHFDCMKLPYTLKTYICPACNPCTEVLSTTSLDHGRLTSAKFEEPKTPSPRHTDPRKKQKRDSQSLIQNLFVPPKNQNGNFRYSSGIECLCWRNRKPFRRAAKKRVDLGSLSPFIYIQR 1838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02117 1838 CDD ARID 100 187 - -
Bva11g02117 1838 Pfam PHD-finger 1698 1742 IPR019787 -
Bva11g02117 1838 Pfam PHD-finger 245 292 IPR019787 -
Bva11g02117 1838 Gene3D Cupin 14 533 - -
Bva11g02117 1838 SUPERFAMILY FYVE/PHD zinc finger 234 293 IPR011011 -
Bva11g02117 1838 Pfam JmjC domain, hydroxylase 416 532 IPR003347 -
Bva11g02117 1838 SUPERFAMILY ARID-like 81 198 IPR036431 GO:0003677
Bva11g02117 1838 Pfam jmjN domain 32 65 IPR003349 -
Bva11g02117 1838 Gene3D - 99 201 IPR036431 GO:0003677
Bva11g02117 1838 ProSiteProfiles Zinc finger PHD-type profile. 243 293 IPR019787 -
Bva11g02117 1838 SMART JmjN_1 30 71 IPR003349 -
Bva11g02117 1838 SMART cupin_9 383 549 IPR003347 -
Bva11g02117 1838 Pfam PLU-1-like protein 896 1183 IPR013637 -
Bva11g02117 1838 Pfam PLU-1-like protein 759 1029 IPR013637 -
Bva11g02117 1838 Pfam PLU-1-like protein 1146 1397 IPR013637 -
Bva11g02117 1838 PANTHER LYSINE-SPECIFIC DEMETHYLASE 29 789 - -
Bva11g02117 1838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 296 IPR013083 -
Bva11g02117 1838 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Bva11g02117 1838 SMART ARID_2 95 187 - -
Bva11g02117 1838 CDD PHD_RSF1 246 290 - -
Bva11g02117 1838 SUPERFAMILY Clavaminate synthase-like 339 568 - -
Bva11g02117 1838 Pfam C5HC2 zinc finger 626 677 IPR004198 -
Bva11g02117 1838 Pfam ARID/BRIGHT DNA binding domain 107 187 IPR001606 GO:0003677
Bva11g02117 1838 SUPERFAMILY FYVE/PHD zinc finger 1425 1488 IPR011011 -
Bva11g02117 1838 MobiDBLite consensus disorder prediction 1757 1782 - -
Bva11g02117 1838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1685 1741 IPR013083 -
Bva11g02117 1838 SUPERFAMILY FYVE/PHD zinc finger 1695 1749 IPR011011 -
Bva11g02117 1838 SMART bright_3 99 192 IPR001606 GO:0003677
Bva11g02117 1838 ProSiteProfiles ARID domain profile. 98 191 IPR001606 GO:0003677
Bva11g02117 1838 ProSiteProfiles JmjC domain profile. 383 549 IPR003347 -
Bva11g02117 1838 ProSitePatterns Zinc finger PHD-type signature. 1699 1739 IPR019786 -
Bva11g02117 1838 SMART PHD_3 1443 1487 IPR001965 -
Bva11g02117 1838 SMART PHD_3 245 291 IPR001965 -
Bva11g02117 1838 SMART PHD_3 1698 1740 IPR001965 -
Bva11g02117 1838 MobiDBLite consensus disorder prediction 1757 1793 - -
Bva11g02117 1838 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 29 789 - -
Bva11g02117 1838 ProSitePatterns Zinc finger PHD-type signature. 246 290 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02117 Bva-Chr11 17513136 17528239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g02117 40 95 JUMONJI Transcription Factor Family AT4G20400 51.667 1.14e-09 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bva11g02117 PLU-1 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02117 K11446 - gmx:100819576 2793.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02117 11 17513136 17528239 Bva11g02117 11 17513136 17528239 ECH