Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva11g02101 | atggcgTTCAGCGGGACCCAACAGAAATGCAAGGCTTGCGATAAAACTGTTCATTTCGTGGACGCATTGTCAGCCGATGGCGCCGCTTATCACAAGACTTGCTTCAAATGCAGTCACTGCAGTGGGCAACTTGCCATAAGCACTTACTCCTCCATGGATGGACTCTTGTACTGCAAAGCTCACTTTGAGCAGCTTTTCAAGGAGACCGGCATCTCGACAAAGAAATTCCAGACAGCTGGAATGCGCCAGAATGAGCAGCTGACCAGGGCTCCTAGCAAAGTCTCTGCCTTCTTCTCCGGGACGCAAGACAAATGTTCATCCTGCAAGAAAACTGTATATCCATTGGAGAAGATCACGGTGGAAGGAGAATTTTACCACAAGGCATGCTTCAGATGCGCTCAAGGGGGATGTTTCCTGAACGCTTCATCCTATGCTGCTCTTGATGGATTTATTTACTGCAAGCATCATTTTGCTCAGTTGTTCAAGGAGAAGGGCAGCTACAGTTATCTCAGCAAGGCAGCTTccatgaagaaaaatgaattgcAACAGGCAGCGGAGAAGGCCGACTCAGAGTCAAAACCatcagaagcagaagcagaaactGCAAAGGAACAAGAACAAGACGCCGCTCAAAAGCAATA | 641 | 0.4477 | MAFSGTQQKCKACDKTVHFVDALSADGAAYHKTCFKCSHCSGQLAISTYSSMDGLLYCKAHFEQLFKETGISTKKFQTAGMRQNEQLTRAPSKVSAFFSGTQDKCSSCKKTVYPLEKITVEGEFYHKACFRCAQGGCFLNASSYAALDGFIYCKHHFAQLFKEKGSYSYLSKAASMKKNELQQAAEKADSESKPSEAEAETAKEQEQDAAQKQ | 213 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva11g02101 | 213 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 97 | 130 | - | - | |
| Bva11g02101 | 213 | MobiDBLite | consensus disorder prediction | 182 | 213 | - | - | |
| Bva11g02101 | 213 | PANTHER | OS06G0237300 PROTEIN | 1 | 210 | IPR045268 | GO:0051015 | |
| Bva11g02101 | 213 | Coils | Coil | 171 | 191 | - | - | |
| Bva11g02101 | 213 | ProSiteProfiles | LIM domain profile. | 103 | 163 | IPR001781 | - | |
| Bva11g02101 | 213 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Bva11g02101 | 213 | Pfam | LIM domain | 105 | 160 | IPR001781 | - | |
| Bva11g02101 | 213 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 131 | 169 | - | - | |
| Bva11g02101 | 213 | MobiDBLite | consensus disorder prediction | 181 | 213 | - | - | |
| Bva11g02101 | 213 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Bva11g02101 | 213 | Gene3D | Cysteine Rich Protein | 5 | 98 | - | - | |
| Bva11g02101 | 213 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 210 | - | - | |
| Bva11g02101 | 213 | Gene3D | Cysteine Rich Protein | 99 | 169 | - | - | |
| Bva11g02101 | 213 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 75 | - | - | |
| Bva11g02101 | 213 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Bva11g02101 | 213 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Bva11g02101 | 213 | SMART | lim_4 | 104 | 156 | IPR001781 | - | |
| Bva11g02101 | 213 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva11g02101 | Bva-Chr11 | 17446990 | 17448326 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Bva11g02101 | LIM | 4.4e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva11g02101 | - | K24413 | zju:107429947 | 311.997 |