Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02100 ATGTACTCATCCATCCTCTCAGAACGCCCTAGGACCTTATCGAAGCTTCTCTGCTCCTTCATCTTGGCGCGAGACATGGGCGGGGGTCCTCGGACCTTCCCTGGCGGCGTCAACAAGTGGAAATGGAAGCGCATGCATGAGAAGCGAGCAAGAGATAAAGAGAGAAGGCTACTTgaacaagaaaagcaaatcTACCAGGCTCGAATTCGATCACACATTCGGGCAGAACTTGCAGGAAAACCAGACCCTGGAAGCACCAGTTATGGCCTTTTGTCCCCGGAGGAACACATAAAGGCCTTAGCCAACAGATTTAAGAAGGAAGGAGCTGAAGATCTCTGGAACATAAATGACGGTTCGTTGAAGTCTCCGCCTCCGTGTTTCAGAGAACTTCCGGGAACGAATCGATCGAGCAGACGCCCAGGTTCCATTGGACCGCCGGTGGATTTGAGGAAACTGATACCGGAAGGCCGTCACTTGGTTTCTAATAATGGAATCGGAAATTTGACAGATACAAATGGCAACTACGTACAGACTAGGAATTATTCAGTGCGAAGTCAAAGGAAATTTGAGTGTTACAACAACTCTTCGGCCGAAGATGTTTCCAATTCTAGTTTGAAGGGAAATTCTGCAAGTTCCACCATTAGAAATTTAGTCACTAATCCGAGAAACATGAGTAGCACAAGTGTGGAtgattacataaataataagaatgtTATGCCAAAAAGGGAGCAAAAATTTTGGAGGAGTGAGAGTGAATCAGAGTGGGATGTGGAGGGTGAAATTGGGAACTATTCAAGGGGCTGCAGGTTGAATTTTGCTGGAGAAGAAGCATCAGGAAATGGTGAGGATTTAAGAATTGGGAGGGATGTAAGAAAGATGGGTAGTAGTGCTGCTTTGGGGGAGTATGACGTCAAATCCAAGGGGAGGATGCTGCCAAAGGCATATGACGAGGTGAATGATCTTTCAGAGCAGGTTGAGTTGATCAGGGATCAACTTAGTGTGGGGAAGCCGGCCCAGAATGAGGAGCAGAAAACTAAGGGAGAAATGATGCTTAGTCAGAGAAGatTTGATGAGTGCGGTATATCACCATTGACGGTCAAGGCACTTTCTTTGGCTGGTTATATTCACATGAGTCGGGTACAAGAGGCATCCCTTTCTGTTTGCCTTGAAGGCAAGGATGCTTTGCTCAAAGCCAAAACTGGCACGGGAAAAAGTGTGGCATTTTTGCTTCCTGCTATTGAAACAGTTCTGAAGGCTATGTATAGCAACACCAATCGACAGGTGCCTCCAATATTTGTTCTTATACTCTGTCCTACCAGAGAACTTGCTAGCCAAATTGCTGCTGAAGCAAAGGTTTTGCTGAAGTATCATGATGGAATTGGAGTGCAAACTCTAGTTGGAGGCACACGatttaaagttgaccaaaactGCCTTGAATCAGATCCAAGCCAGATAATTGTTGCTACTCCTGGTAGGTTGTTGGATCATATTGAGAATAAGTCTGGCATATCTTTGCGGTTGATGAGCTTGCAAATGCTTGTACTTGATGAAGCTGACCATTTACTGGACCTGGGATTTCGAAAGGATGTGGAAAAGATTGTTGATTGTTTGCCCCGTCAGAGGCAATCATTGCTATATTCTGCAACCATCCCAAAGGAGGTTCGTCGTATATCTCAACTTGTTTTGAAGAGGGAACATACATATATTGACACCGTGGGGTTTGGCTGTGTGGAAACTCCAACTAAGATAAAGCAATCTTTTCTCATTGCTCCACACGAATGGCATTTTCAAATTGTTCATCATATTTTGAAGGAGCATATCTTGCAAGCTCGCGATTATAAGGTTATTGTTTTCTGTGTAACTGGGATGCTGACATCATTTATGTATCAACTTCTCcgggaaatgaaaatgaatgtcAGAGAGATACATTCCCGAAAGCCTCAACTCTATCGAACTCGTATATCAGATGAGTTCAGGGAATCCAAACAACTAATTCTAGTGTCGTCAGATGTTTCAGCCCGGGGAATGAATTATCCTGATGTTACCTTAGTCATTCAGGTGGGTATTCCATGTGACCGAGAACAATATATACACCGTCTTGGAAGAACAGGACGAGAAGGCAAAGAAGGGGAAGGCATATTGCTGATTGCTCCATGGGAAGAGTACTTTCTAGATGAAATTAAGGATCTTCCTCTGGAGAGATTCTCTTTACCAGATATAGATCCCCAGACAAAGCTCAAGATAGAGGATTCAATAGCGAAGATTGGTAGTGACGTCAAAGAAAGAGTTTATCATGCTTGGCTTGGTTATTATAATTCAATCAGGGAAATTGGGAGGGATAAGACCACTCTAGCGCAACTGGCGGacaaattttctaaatcaatTGGGTTACAAACACCTCCTGCTCTCTTCAGAAAGACTGCACTAAAAATGGGTTTAAGAGATATTCCTGGCATCAAAATTCGTAGATA 2471 0.4253 MYSSILSERPRTLSKLLCSFILARDMGGGPRTFPGGVNKWKWKRMHEKRARDKERRLLEQEKQIYQARIRSHIRAELAGKPDPGSTSYGLLSPEEHIKALANRFKKEGAEDLWNINDGSLKSPPPCFRELPGTNRSSRRPGSIGPPVDLRKLIPEGRHLVSNNGIGNLTDTNGNYVQTRNYSVRSQRKFECYNNSSAEDVSNSSLKGNSASSTIRNLVTNPRNMSSTSVDDYINNKNVMPKREQKFWRSESESEWDVEGEIGNYSRGCRLNFAGEEASGNGEDLRIGRDVRKMGSSAALGEYDVKSKGRMLPKAYDEVNDLSEQVELIRDQLSVGKPAQNEEQKTKGEMMLSQRRFDECGISPLTVKALSLAGYIHMSRVQEASLSVCLEGKDALLKAKTGTGKSVAFLLPAIETVLKAMYSNTNRQVPPIFVLILCPTRELASQIAAEAKVLLKYHDGIGVQTLVGGTRFKVDQNCLESDPSQIIVATPGRLLDHIENKSGISLRLMSLQMLVLDEADHLLDLGFRKDVEKIVDCLPRQRQSLLYSATIPKEVRRISQLVLKREHTYIDTVGFGCVETPTKIKQSFLIAPHEWHFQIVHHILKEHILQARDYKVIVFCVTGMLTSFMYQLLREMKMNVREIHSRKPQLYRTRISDEFRESKQLILVSSDVSARGMNYPDVTLVIQVGIPCDREQYIHRLGRTGREGKEGEGILLIAPWEEYFLDEIKDLPLERFSLPDIDPQTKLKIEDSIAKIGSDVKERVYHAWLGYYNSIREIGRDKTTLAQLADKFSKSIGLQTPPALFRKTALKMGLRDIPGIKIRR 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02100 823 Gene3D - 578 803 IPR027417 -
Bva11g02100 823 SMART ultradead3 373 586 IPR014001 -
Bva11g02100 823 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 385 568 IPR014001 -
Bva11g02100 823 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 724 IPR027417 -
Bva11g02100 823 Pfam Helicase conserved C-terminal domain 601 706 IPR001650 -
Bva11g02100 823 SMART helicmild6 626 707 IPR001650 -
Bva11g02100 823 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 602 752 IPR001650 -
Bva11g02100 823 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 354 382 IPR014014 GO:0003724
Bva11g02100 823 Coils Coil 43 63 - -
Bva11g02100 823 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 29 822 - -
Bva11g02100 823 MobiDBLite consensus disorder prediction 123 147 - -
Bva11g02100 823 CDD SF2_C_DEAD 583 716 - -
Bva11g02100 823 Pfam DEAD/DEAH box helicase 379 556 IPR011545 GO:0003676|GO:0005524
Bva11g02100 823 Gene3D - 333 570 IPR027417 -
Bva11g02100 823 PANTHER RNA HELICASE 29 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02100 Bva-Chr11 17442139 17446600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g02100 356 732 Eukaryotic Initiation Factors Gene Family AT3G19760 29.114 1.88e-44 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02100 - - qlo:115971965 1055.05