Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02091 ATGCTAGATATTAAGAAGGAGCTAGAGGAATTTGCTAATGATTCAGCTAAAGGAGATGGCACCcctttgtgtttttcttcattcaatGGAAATTGTAGTACCTCTATTCTGAGATCACCCTCTGTTTCACGGAGAATGAAAGGTCCAGCTAGACGCTCAACAAGGGGATGTTGGACAGATGAACAGgacaatattttgattgaggCAGTCAAGAAGCAGAACGGAAGGAACTGGAAGAAGATAGCTGCTAGCCTCCCTGGCCGAACTGATACTCAATGCTTGCATCGCTGGCAAAAGGTTTTAAATCCTGAACTTGTAAAGGGATCTTGGACAAAGGAGgAGGATGATCGTATTGTTGAGCTAGTCAAAAAGTTTGGTTGCAAGAGATGGTCTGTTGTCGCAAAATCCTTACGAGGTCGTATTGGTAAACAATGCCGAGAGAGGTGGTACAATCACCTGGACCCAGCTATAAAGAAACATGCATGGAGCAAGGAGGAGGAATCAATAATTGCTTACTATCACCAAGTATATGGTAACAAGTGGGCAGAAATTGCAAGGTTTCTTCCTGGAAGGACTGACAACGCTATAAAAAATCACTGGAATTGCACAATGAAGAAGAATCTCCATCTGGATGGATGGTCACCTTGTGATTGTGTTATACAAGAGGCGACATCCGGTTTCTGCACTACTGGAATTAAAAGGCAAGAATTTCCAATTATAGAAAATCACATCAGATGTGTAGACAATCCATGTTGCTATCATACTCCCCCTAAGTCTGGATTCAGATGCTGCGAAGGTAGCATCAGCCCAGAATCTGTACTTAAAAGGTTAGCAATGACCTATGAGAATATTCCTTCCATTATAAGGAAGAGAGCTTGCAGGAAGACTGGTAAAATTGACCACAAGGCCAACAGTCTTTCGCCTTCCCGATTGATCTTCTGTACTCCTGAAGCAGAGTGCGTCAACAGCTTAGACGAATTTAAATCGAAGCAGAGGTTTATTTCGTTCCTGCCTCAATCTAGAACTTCACCCGTTGCTTA 1040 0.4125 MLDIKKELEEFANDSAKGDGTPLCFSSFNGNCSTSILRSPSVSRRMKGPARRSTRGCWTDEQDNILIEAVKKQNGRNWKKIAASLPGRTDTQCLHRWQKVLNPELVKGSWTKEEDDRIVELVKKFGCKRWSVVAKSLRGRIGKQCRERWYNHLDPAIKKHAWSKEEESIIAYYHQVYGNKWAEIARFLPGRTDNAIKNHWNCTMKKNLHLDGWSPCDCVIQEATSGFCTTGIKRQEFPIIENHIRCVDNPCCYHTPPKSGFRCCEGSISPESVLKRLAMTYENIPSIIRKRACRKTGKIDHKANSLSPSRLIFCTPEAECVNSLDEFKSKQRFISFLPQSRTSPVA 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02091 346 Gene3D - 54 106 - -
Bva11g02091 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 101 IPR017930 -
Bva11g02091 346 SMART sant 106 155 IPR001005 -
Bva11g02091 346 SMART sant 54 103 IPR001005 -
Bva11g02091 346 SMART sant 158 206 IPR001005 -
Bva11g02091 346 CDD SANT 161 201 IPR001005 -
Bva11g02091 346 Gene3D - 107 158 - -
Bva11g02091 346 CDD SANT 109 153 IPR001005 -
Bva11g02091 346 Pfam Myb-like DNA-binding domain 107 153 IPR001005 -
Bva11g02091 346 Pfam Myb-like DNA-binding domain 161 201 IPR001005 -
Bva11g02091 346 Pfam Myb-like DNA-binding domain 55 101 IPR001005 -
Bva11g02091 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 208 IPR017930 -
Bva11g02091 346 ProSiteProfiles Myb-like domain profile. 50 101 IPR001005 -
Bva11g02091 346 Gene3D - 160 215 - -
Bva11g02091 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 157 IPR017930 -
Bva11g02091 346 ProSiteProfiles Myb-like domain profile. 154 204 IPR001005 -
Bva11g02091 346 PANTHER TRANSCRIPTIONAL ACTIVATOR MYB-LIKE ISOFORM X1 34 215 - -
Bva11g02091 346 SUPERFAMILY Homeodomain-like 52 108 IPR009057 -
Bva11g02091 346 SUPERFAMILY Homeodomain-like 104 200 IPR009057 -
Bva11g02091 346 CDD SANT 58 101 IPR001005 -
Bva11g02091 346 PANTHER MYB PROTEIN-RELATED 34 215 - -
Bva11g02091 346 ProSiteProfiles Myb-like domain profile. 102 153 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02091 Bva-Chr11 17406027 17410582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g02091 106 214 MYB Transcription Factor Family AT5G02320 34.545 2.23e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva11g02091 Myb_DNA-binding 9.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02091 - K09420 gmx:100814774 315.079