LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva11g02089	ATGGAAGAAGGAGAGGGAAGGTTCTGGAAAAGGACAGCCGAAACCTATCAGCGGGCCCAAGAGATAGCTAGCTCCCAACTGGCCTTTGCTGGTGATTTCTCGTTCAACTgggtttcttcttgttttcccGTTGAGATATTTCAAGGACTTGGATCAACATGGCAGGATAACCCATCCCATCTTTTTCAAGATCTGGAAGCAAAATCGATGATGCCATTAGAGGTCGAGCAGACTGGCGAATCAACACAGCCATTAGAATCTCATAGATCTATACCGACGCCGTTTCTCACGAAAACTTATCAACTTGTGGATGATCCGTCTGTGGGTGACCTAATTTCATGGAACGAAGATGGTACCAGTTTCATAGTTTGGCGACCGGCTGAGTTTGCTCGAGATTTGCTTCCTAAATATTTTAAGCACAACAATTTTTCAAGTTTCGTCCGTCAACTTAACACCTATGGGTTTCGGAAGGTTGTCCCGGATCGATGGGAATTTGCCAATGATTGTTTCCAACGAGGAGAGAAAGGTCTGCTTCAAGACATACAACGGCGGAAAATATCGCCTTCGGCAGGAGGTGGGACGACCGTAGCGGCAGGTTCGGTTAAGGCAGCGACGGTGGCTGCTGCGCCGAGAGCGGGAGTGGTGTCTCCAACCAACTCGGGCGAGAAACAGGTAATGTCGTCAAACTCATCTCCCATTCGTGTACATAATACAGTGCACCGCACCACAAGTTGCACCAGTGCGCCCGAGATGTTGGAAGAGAATGAGAGGCTTAGGAAAGAGAACACGAAACTGAGTCACGAATTGAGTCAATTGAAGGGTCTGTGTAATAACGTACTTGCTTTGATGACCAATTATGCTTCTAGCCAACTAGAGTCTACTACCACCAGTATGCATGAAGCAGAAGGGAAACCATTGGAGCTTTTACCGGCAAACCAAACTCTAGCCGAGCAAGTCGTCGTCGGAGGTGAGAGTGGCAGTGGTAGTCTAGGTGCGGAGGTTGAGATACCCAAGTTGTTTGGGGTTTCAATTGGGTTTAAACGATGTAGGCAACAAAGTGAGGATGCCGGGAAAGAAGAACAAATGCAACCACAGTCGTCCCAGGAATATGAACCCGGATCAAATGTCAAATCCGAACCATTGGACGTCGATGGCAACAACTCGGATGGTCAGGAGCCTCCCTGGCTAGAGCTTGGCAAATA	1202	0.4742	MEEGEGRFWKRTAETYQRAQEIASSQLAFAGDFSFNWVSSCFPVEIFQGLGSTWQDNPSHLFQDLEAKSMMPLEVEQTGESTQPLESHRSIPTPFLTKTYQLVDDPSVGDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFQRGEKGLLQDIQRRKISPSAGGGTTVAAGSVKAATVAAAPRAGVVSPTNSGEKQVMSSNSSPIRVHNTVHRTTSCTSAPEMLEENERLRKENTKLSHELSQLKGLCNNVLALMTNYASSQLESTTTSMHEAEGKPLELLPANQTLAEQVVVGGESGSGSLGAEVEIPKLFGVSIGFKRCRQQSEDAGKEEQMQPQSSQEYEPGSNVKSEPLDVDGNNSDGQEPPWLELGK	400

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva11g02089	400	MobiDBLite	consensus disorder prediction	351	400	-	-
	Bva11g02089	400	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	76	391	IPR027725	-
	Bva11g02089	400	ProSitePatterns	HSF-type DNA-binding domain signature.	134	158	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva11g02089	400	SMART	hsfneu3	91	184	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva11g02089	400	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR B-2B	76	391	-	-
	Bva11g02089	400	Gene3D	-	87	185	IPR036388	-
	Bva11g02089	400	MobiDBLite	consensus disorder prediction	358	385	-	-
	Bva11g02089	400	Pfam	HSF-type DNA-binding	95	184	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva11g02089	400	Coils	Coil	248	275	-	-
	Bva11g02089	400	SUPERFAMILY	"Winged helix" DNA-binding domain	92	184	IPR036390	-
	Bva11g02089	400	PRINTS	Heat shock factor (HSF) domain signature	95	118	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva11g02089	400	PRINTS	Heat shock factor (HSF) domain signature	146	158	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Bva11g02089	400	PRINTS	Heat shock factor (HSF) domain signature	133	145	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva11g02089	Bva-Chr11	17398023	17400334	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva11g02089	86	400	HSF	AT4G11660	52.410	2.02e-104	311

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Bva11g02089		HSF_DNA-bind	2.5e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva11g02089	K09419		-	gmx:100791020	405.216