Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02086 ATGGCGACAACTAGGTCACCGAATCGTTCATCTGAGGACATCGTCGATACAACGCCGTTCATTGGAAATTCAGGTGGGTCTTCTGATGAATTCAATTCTGGCCGTCGATTTGTCCGGAGACAGAGCCTGCGCCAAGCCGCACGGTTCCTTAGGCAGGCAAGTAGTCGTAGGATGATGCGCGAACCGTCGATGCTGGTCAGAGAGACTGCAGCTGAGCAATTAGAAGAAAGACAGAGCGATTGGGCTTATTCTAAGCCCGTGGTGATTCTTGATATTATTTGGAACTTCGCCTTTGTTGTCGTTGCCGCCACTGTGTTGGTTTTGAGCCGACGTGAATCGCCGAGCATGCCTGTGAGGTTGTGGATTGTGGGATATGCTCTACAATGCCTCCTTCACATGGTCTGTGTTTGCGTTGAGTATAGGAGACGGAGGCGGTACCAGCGCATCCAATTTTCTCCATCCTTGAATACAGTGCAGGGAAGGATCAGCAGCAGTGGAAATTTGAGTTCGGTTTCAAGGGAAGGTTCTGGGCAGTATGTGACATTGGCCCAATTGGGTGAGGAGGGGACAAGTTTTGCAAAGCATCTGGAATCTGCAAATAcaatgttttcatttatttggtggatttttggattttactgGGTTTCGGCTGGTGGTCAGGCGTTAGCCCATGATTCTCCTCAGCTTTACTGGCTTTGTATAATCTTCCTGGgttttgatgttttctttgtCGTTTTCTGTGTTGCACTGGCTTGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCATGTATCATTGCGCTTTTATATGCTGTCGCAGACCAGGAAGGAGCATCAAAAGAAGATATCGAGCAGTTATCAAAGTTCAAATTCCGAAGAATTGATAATGATGAGAAACTTGCGGGCAACAACACCCAAGGACCTGTTGGAGGAATAATGACTGAATGTGGAGTTGATTCGCCTATTGAACACATTCTTTCAGACGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGAAGATGGAATTGAACTTAGACAACTTCCATGCGGTCACCATTTTCACTGTGCCTGTGTGGATAAGTGGCTCTATATTAATGCTACTTGTCCCCTCTGCAAGTATAACATCATGAAAAGTAGCGGTCACAGTCAAGAGGAAGTGTA 1166 0.4477 MATTRSPNRSSEDIVDTTPFIGNSGGSSDEFNSGRRFVRRQSLRQAARFLRQASSRRMMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIIWNFAFVVVAATVLVLSRRESPSMPVRLWIVGYALQCLLHMVCVCVEYRRRRRYQRIQFSPSLNTVQGRISSSGNLSSVSREGSGQYVTLAQLGEEGTSFAKHLESANTMFSFIWWIFGFYWVSAGGQALAHDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIDNDEKLAGNNTQGPVGGIMTECGVDSPIEHILSDEDAECCICLSAYEDGIELRQLPCGHHFHCACVDKWLYINATCPLCKYNIMKSSGHSQEEV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02086 388 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 388 - -
Bva11g02086 388 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Bva11g02086 388 PANTHER TARGET OF ERK KINASE MPK-1 5 388 - -
Bva11g02086 388 MobiDBLite consensus disorder prediction 1 31 - -
Bva11g02086 388 SMART ring_2 333 373 IPR001841 -
Bva11g02086 388 MobiDBLite consensus disorder prediction 1 32 - -
Bva11g02086 388 CDD RING-H2_RNF111_like 332 376 - -
Bva11g02086 388 Pfam Ring finger domain 332 374 IPR001841 -
Bva11g02086 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 383 IPR013083 -
Bva11g02086 388 SUPERFAMILY RING/U-box 323 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02086 Bva-Chr11 17388387 17391721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g02086 24 386 C3H Transcription Factor Family AT1G68070 48.626 1.53e-116 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02086 - - gmx:100790497 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02086 11 17388387 17391721 Bva08g00202 08 980669 984870 BWGD