Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva11g02060 ATGCAAGAGCCAAGCTTGGGAATGATGGGTGGTGGTTTAAGCGGAGATTTATCCGGCTCCGGCGATCACCACCGACAACTGAAGGCAGAGATAGTGACTCATCCACTCTATGAGCAACTTCTAGCAGCCCATGTGTCTTGTCTCCGTGTTGCCACTCCCATCGATCAGCTTCCGCTCATCGATGCCCAGTTGTCTCAGTCCCACCATATTCTACGCTCTTATGCCTCCCATCATACCCATTCCCTTTCGCCTCATGACCGCCAAGAACTTGACAATTTCCTGGCACAGTATCTGATAGTGCTGTGTACTTTCAAAGAACAGCTTCAGCAACATGTCAGAGTCCACGCCGTGGAGGCTGTGATGGCCTGCCGTGATATTGAAAATACTTTACAAGCTATCACAGGAGTAAGCTTGGGAGAAGGAAGTGGGGCAACAATGtcagatgatgaagatgatttgCAGATGGATTTCTGTTTAGATCAGGGTGGAGCTGAAGGGCACGACATGATGGGGTTTGGTCCATTAATGCCTACGGAATCTGAAAGGTCACTGATGGAAAGAGTTCGTCAAGAACTAAAGATTGAGCTGAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTAAGAGAGGAAATATTAAGGAAACGACGAGCTGGGAAATTACCAGGTGACACAACTTCGGTTCTGAAAACTTGGTGGCAGCAGCATTCAAAGTGGCCCTACCCAACGGAAGATGACAAAGCAAAACTTGTGGAGGAGACAGGTTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAATCAAAGGAAGCGCAATTGGCACAGCAACTCTCAATCAGTTACCTCTTTAAAGTCAAAGCGCAAGAGGTA 866 0.4596 MQEPSLGMMGGGLSGDLSGSGDHHRQLKAEIVTHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQSHHILRSYASHHTHSLSPHDRQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQAITGVSLGEGSGATMSDDEDDLQMDFCLDQGGAEGHDMMGFGPLMPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva11g02060 288 Pfam KNOX1 domain 27 68 IPR005540 GO:0003677|GO:0005634
Bva11g02060 288 SMART HOX_1 213 278 IPR001356 GO:0003677
Bva11g02060 288 MobiDBLite consensus disorder prediction 1 20 - -
Bva11g02060 288 Pfam KNOX2 domain 83 134 IPR005541 GO:0003677|GO:0005634
Bva11g02060 288 Pfam Homeobox KN domain 231 270 IPR008422 GO:0003677|GO:0006355
Bva11g02060 288 SMART KNOX2_2 80 135 IPR005541 GO:0003677|GO:0005634
Bva11g02060 288 SUPERFAMILY Homeodomain-like 213 278 IPR009057 -
Bva11g02060 288 ProSiteProfiles 'Homeobox' domain profile. 211 274 IPR001356 GO:0003677
Bva11g02060 288 CDD homeodomain 214 275 IPR001356 GO:0003677
Bva11g02060 288 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 288 - -
Bva11g02060 288 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Bva11g02060 288 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 288 - -
Bva11g02060 288 Gene3D - 210 284 - -
Bva11g02060 288 ProSiteProfiles ELK domain profile. 191 211 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva11g02060 Bva-Chr11 17262322 17266532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva11g02060 1 287 Homeobox Transcription Factor Family AT1G62990 79.110 4.37e-172 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bva11g02060 KNOX2 3.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva11g02060 - - gmx:100782179 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva11g02060 11 17262322 17266532 Bva08g00230 08 1111646 1115579 BWGD
Bva11g02060 11 17262322 17266532 Bva11g02060 11 17262322 17266532 ECH